Co-expression analysis

Gene ID	Zm.18098.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g24110: WRKY30 (HF=7e-6)
Module size	6 genes
NF	0.03
%ile	1.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.89	Zm.18098.1.A1_at	CK347304	-	-	7e-6	At5g24110	WRKY30	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.95	Zm.7878.1.A1_at	CF018410	hypothetical protein LOC100193558	-	2e+0	At4g17565	F-box family protein	O.I.	H.G.	S.X.	Please select
0.05	1.9	0.93	Zm.12525.1.A1_at	BG266189	-	-	3e+0	At3g54550	unknown protein	O.I.	H.G.	S.X.	Please select
0.02	0.7	0.95	Zm.15057.1.S1_at	BM337751	hypothetical protein LOC100277048	-	2e+0	At5g03660	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	0.3	0.94	Zm.12589.1.S1_a_at	AY389497.1	hypothetical protein LOC100193645 /// ribosomal protein S6 kinase	-	4e-12	At3g08720	S6K2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2)	O.I.	H.G.	S.X.	Please select
0.01	0.3	0.96	Zm.1412.1.A1_at	CA405074	actin-like protein 3	-	3e-50	At1g13180	DIS1 (DISTORTED TRICHOMES 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.7	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.207935.1.S1_at, orthologous to the query gene, Zm.18098.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	87.0	PtpAffx.207935.1.S1_at	At5g24110	hypothetical protein	-	8e-12	At2g47260	WRKY23	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.207935.1.S1_x_at	At5g24110	hypothetical protein	-	8e-12	At2g47260	WRKY23	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.1197.3.S1_at	At5g24110	-	-	8e+0	At4g26240	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	Ptp.3814.1.S1_s_at	At5g24110	-	-	4e-1	At2g46505	SDH4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.53	80.5	PtpAffx.35515.1.S1_at	At5g24110	-	-	3e-1	At1g43900	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.7270.1.S1_at	At5g24110	AP2/ERF domain-containing transcription factor	-	5e-14	At2g47520	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.163254.1.S1_at	At5g24110	hypothetical protein	-	2e+0	At3g59370	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.216865.1.S1_s_at	At5g24110	hypothetical protein	-	3e-16	At2g24300	calmodulin-binding protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.59463.1.A1_at	At5g24110	-	-	4e-1	At5g44290	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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