Co-expression analysis

Gene ID Zm.18085.1.S1_at
Gene name hypothetical protein LOC100274126
Homology with ArabidopsisSimilar to At5g13800: hydrolase, alpha/beta fold family protein (HF=5e-11)
Module size 6 genes
NF 0.47
%ile 58.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.97Zm.18085.1.S1_atCK986038hypothetical protein LOC100274126-5e-11At5g13800hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.6179.50.97Zm.9649.1.A1_atBM337167hypothetical protein LOC100277264-1e+0At1g43720unknown proteinO.I.H.G.S.X.
0.5775.10.97Zm.18460.1.S1_atCO521354hypothetical protein LOC100216873-8e-3At1g60430ARPC3 (actin-related protein C3)O.I.H.G.S.X.
0.3538.90.97Zm.2234.3.A1_a_atCO526105hypothetical protein LOC100273895-9e-9At4g17180glycosyl hydrolase family 17 proteinO.I.H.G.S.X.
0.3437.20.96Zm.13855.1.A1_atAF439731.1glycine cleavage complex T-protein-7e-47At1g11860aminomethyltransferase, putativeO.I.H.G.S.X.
0.2521.30.96ZmAffx.1198.1.S1_atBE056195--2e-1At1g75040PR5 (PATHOGENESIS-RELATED GENE 5)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.498.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.797.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM385710Deep-sowing 10d treatment TIBA, biological rep2GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO
5.196.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM385709Deep-sowing 10d treatment TIBA, biological rep1GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO
4.396.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os06g0354700, orthologous to the query gene, Zm.18085.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.2Os06g0354700At5g13800-Alpha/beta hydrolase fold domain containingprotein5e-3At5g13800hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.6079.7Os10g0389200At5g13800-Red chlorophyll catabolite reductase (EC 1.-.-.-)(RCC reductase) (HvRCCR) (Fragment)6e-1At2g21180unknown proteinO.I.H.G.S.X.
0.5068.0Os03g0146400At5g13800-Lethal leaf-spot 1 (Fragment)2e-14At3g44880ACD1 (ACCELERATED CELL DEATH 1)O.I.H.G.S.X.
0.2931.1Os07g0204100At5g13800-Conserved hypothetical protein7e-1At5g4770060S acidic ribosomal protein P1 (RPP1C)O.I.H.G.S.X.
0.116.5Os03g0168200At5g13800-Conserved hypothetical protein6e-1At4g09180basic helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.116.5Os11g0607200At5g13800-Protein kinase domain containing protein8e-2At5g65240kinaseO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage