Co-expression analysis

Gene ID	Zm.18085.1.S1_at
Gene name	hypothetical protein LOC100274126
Homology with Arabidopsis	Similar to At5g13800: hydrolase, alpha/beta fold family protein (HF=5e-11)
Module size	6 genes
NF	0.47
%ile	58.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.97	Zm.18085.1.S1_at	CK986038	hypothetical protein LOC100274126	-	5e-11	At5g13800	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.97	Zm.9649.1.A1_at	BM337167	hypothetical protein LOC100277264	-	1e+0	At1g43720	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.18460.1.S1_at	CO521354	hypothetical protein LOC100216873	-	8e-3	At1g60430	ARPC3 (actin-related protein C3)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.2234.3.A1_a_at	CO526105	hypothetical protein LOC100273895	-	9e-9	At4g17180	glycosyl hydrolase family 17 protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.96	Zm.13855.1.A1_at	AF439731.1	glycine cleavage complex T-protein	-	7e-47	At1g11860	aminomethyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.96	ZmAffx.1198.1.S1_at	BE056195	-	-	2e-1	At1g75040	PR5 (PATHOGENESIS-RELATED GENE 5)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.4	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
5.1	96.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
4.3	96.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig5484_at, orthologous to the query gene, Zm.18085.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig5484_at	At5g13800	-	-	1e-6	At5g13800	hydrolase, alpha/beta fold family protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	Contig385_s_at	At5g13800	-	-	1e-22	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig4010_at	At5g13800	-	-	7e-26	At2g05990	MOD1 (MOSAIC DEATH 1)	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig9376_at	At5g13800	-	-	1e-11	At5g02810	PRR7 (PSEUDO-RESPONSE REGULATOR 7)	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig18320_at	At5g13800	-	-	1e+0	At5g17870	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.26	30.4	HS06G05u_s_at	At5g13800	late embryogenesis abundant protein-like	-	4e+0	At1g32250	calmodulin, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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