Co-expression analysis

Gene ID Zm.18083.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g38670: PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1) (HF=1e-17)
Module size 6 genes
NF 0.69
%ile 91.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.97Zm.18083.1.A1_atBU079763--1e-17At2g38670PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)O.I.H.G.S.X.
0.8395.60.97Zm.515.1.S1_atAF273767.1protoporphyrinogen IX oxidase-4e-3At5g14220HEMG2O.I.H.G.S.X.
0.7792.10.97Zm.19362.1.S1_atAY111241.1--1e+0At5g13440ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putativeO.I.H.G.S.X.
0.7792.10.97Zm.9645.1.S1_atAY207047.1ZmMybst1-1e-8At3g16350myb family transcription factorO.I.H.G.S.X.
0.5571.60.97Zm.1960.1.A1_atAW566154palmitoyltransferase swf1-4e-1At3g04970zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.3641.30.97Zm.1974.1.A1_atCF920129--2e+1At5g36100unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.898.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.592.6GSM206332Lower pulvinus 15 min polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g38670, orthologous to the query gene, Zm.18083.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At2g38670818449PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)Encodes a mitochondrial ethanolamine-phosphate cytidylyltransferase, involved in phosphatidylethanolamine (PE) biosynthesis.O.I.H.G.S.X.
0.4152.4At3g07640819955unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.3541.6At3g15010820730RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:nucleolus;MBPOFVAO.I.H.G.S.X.
0.3235.7At4g01320828209ATSTE24CAAX protease with broad substrate specificity. Localized exclusively to the endoplasmic reticulum.O.I.H.G.S.X.
0.3032.1At4g34960829648peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putativeF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:Golgi apparatus;BOMFPAVO.I.H.G.S.X.
0.2930.3At5g16840831547BPA1 (BINDINGPARTNEROFACD11 1)F:oxidoreductase activity, nucleotide binding, nucleic acid binding;P:oxidation reduction;C:unknown;PFMOBO.I.H.G.S.X.
0.2830.3At4g38630830019RPN10 (REGULATORY PARTICLE NON-ATPASE 10)Regulatory particle non-ATPase subunit of the 26S proteasome with multiubiquitin-chain-binding capabilitiesO.I.H.G.S.X.
0.2726.2At1g56450842098PBG120S proteasome beta subunit PBG1 (PBG1) mRNA, complete cdsO.I.H.G.S.X.
0.2726.2At1g13060837863PBE1Encodes 20S proteasome beta subunit PBE1 (PBE1).O.I.H.G.S.X.
0.2624.4At1g18600838441RBL12 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12)Mitochondrion-located rhomboid-like proteinO.I.H.G.S.X.
0.2624.4At1g34130840312STT3B (staurosporin and temperature sensitive 3-like b)Encodes homolog of yeast STT3, a subunit of oligosaccharyltransferase.O.I.H.G.S.X.
0.2522.6At1g65650842876UCH2F:ubiquitin-specific protease activity, ubiquitin thiolesterase activity;P:protein deubiquitination, shoot development, shoot morphogenesis, leaf development, ubiquitin-dependent protein catabolic process;C:nucleus, intracellular, cytoplasm;MFOPO.I.H.G.S.X.
0.2522.6At1g04690839450KAB1 (POTASSIUM CHANNEL BETA SUBUNIT)F:oxidoreductase activity, potassium channel activity;P:oxidation reduction, potassium ion transport;C:plasma membrane, membrane;BOFMPAO.I.H.G.S.X.
0.2420.7At3g07300819918eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinF:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPO.I.H.G.S.X.
0.2319.3At4g26310828737elongation factor P (EF-P) family proteinF:translation elongation factor activity;P:translational elongation;C:unknown;BOPAO.I.H.G.S.X.
0.2319.3At1g64520842760RPN12a (Regulatory Particle non-ATPase 12a)F:peptidase activity;P:in 14 processes;C:proteasome complex, nucleus, proteasome regulatory particle, lid subcomplex, chloroplast envelope;MFOPO.I.H.G.S.X.
0.2319.3At3g60820825253PBF1Encodes 20S proteasome beta subunit PBF1 (PBF1).O.I.H.G.S.X.
0.2319.3At5g10780830945-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.2217.5At5g09900830850EMB2107 (EMBRYO DEFECTIVE 2107)Encodes one of two isoforms for the 26S proteasome regulatory protein (RN) subunit RPN5. For many functions it acts redundantly with the paralogous gene RPN5b but also appears to exert independent effects.O.I.H.G.S.X.
0.2115.8At5g20920832216EIF2 BETAprotein synthesis initiation factor eIF2 betaO.I.H.G.S.X.
0.2115.8At1g13560837917AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1)Encodes aminoalcoholphosphotransferase AAPT1.O.I.H.G.S.X.
0.2014.4At1g09150837434pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing proteinF:RNA binding;P:biological_process unknown;C:cellular_component unknown;MOFAPO.I.H.G.S.X.
0.2014.4At3g58560825025endonuclease/exonuclease/phosphatase family proteinF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X.
0.1912.7At2g29080817456ftsh3 (FtsH protease 3)encodes an FtsH protease that is localized to the mitochondrionO.I.H.G.S.X.
0.1912.7At1g36310840538methyltransferaseF:methyltransferase activity;P:metabolic process;C:unknown;BOMAFPO.I.H.G.S.X.
0.1710.2At5g10840830951endomembrane protein 70, putativeF:unknown;P:unknown;C:integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall;MPOFBO.I.H.G.S.X.
0.168.8At5g11170830986ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingF:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:response to cadmium ion;C:nucleolus;BOMFPAVO.I.H.G.S.X.
0.168.8At3g19980821536ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)Encodes catalytic subunit of serine/threonine protein phosphatase 2A. It can associate with phytochromes A and B in vitro. Mutant plants display an accelerated flowering phenotype.O.I.H.G.S.X.
0.157.8At3g08550820002KOB1 (KOBITO)mutant is Dwarfed and shows defects in cell elongation; Cellulose deficient; Plasma Membrane ProteinO.I.H.G.S.X.
0.157.8At3g25040822095ER lumen protein retaining receptor, putative / HDEL receptor, putativeF:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:endomembrane system, integral to membrane;MOFPO.I.H.G.S.X.
0.135.8At3g04830819643bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MOFBAPO.I.H.G.S.X.
0.135.8At5g19690832089STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A)encodes an oligosaccharyl transferase involved response to high salt. Mutants are hypersensitive to high salt conditionsO.I.H.G.S.X.
0.124.9At4g35360829689pantothenate kinase family proteinF:pantothenate kinase activity;P:unknown;C:cellular_component unknown;MPBAOO.I.H.G.S.X.
0.124.9At3g27080822326TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3)Component of the TOM complex involved in transport of nuclear-encoded mitochondrial proteinsO.I.H.G.S.X.
0.124.9At1g43690840956ubiquitin interaction motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage