Co-expression analysis

Gene ID	Zm.18071.1.S1_at
Gene name	hypothetical protein LOC100273149
Homology with Arabidopsis	Similar to At5g40550: unknown protein (HF=5e-5)
Module size	33 genes
NF	0.49
%ile	62.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.79	Zm.18071.1.S1_at	CK849985	hypothetical protein LOC100273149	-	5e-5	At5g40550	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.83	ZmAffx.245.1.S1_at	AI670257	-	-	3e+0	At4g33690	unknown protein	O.I.	H.G.	S.X.	Please select
0.68	86.1	0.88	Zm.15903.2.A1_at	BM266872	-	-	2e-11	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.64	81.7	0.85	Zm.1638.1.S1_at	CF628096	hypothetical protein LOC100192625	-	2e-15	At4g27090	60S ribosomal protein L14 (RPL14B)	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.89	RPTR-Zm-J01347-4_at	RPTR-Zm-J01347-4	-	-			-	O.I.	H.G.	S.X.	Please select
0.62	79.8	0.89	RPTR-Zm-J01636-1_at	RPTR-Zm-J01636-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.93	Zm.12244.2.S1_at	AI668243	-	-	9e-1	At5g46940	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.87	Zm.144.1.S1_x_at	U10696.1	metallothionein2	-	2e+1	At5g38344	transmembrane receptor	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.90	RPTR-Zm-X17220-1_at	RPTR-Zm-X17220-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.82	ZmAffx.357.1.A1_at	AI670544	-	-	6e-1	At5g67070	RALFL34 (ralf-like 34)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.81	Zm.11808.1.A1_x_at	BM380907	-	-	3e+0	At1g50490	UBC20 (ubiquitin-conjugating enzyme 20)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.87	ZmAffx.25.1.S1_at	AI621965	Translation initiation factor IF-2-like	-	3e+0	At1g10230	ASK18 (ARABIDOPSIS SKP1-LIKE 18)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.89	Zm.1818.1.S1_a_at	BM073458	hypothetical protein LOC100194358	-	5e+0	At5g48545	histidine triad family protein / HIT family protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.89	Zm.15807.1.A1_at	AY111212.1	-	-	1e+0	At4g19590	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.87	Zm.654.1.A1_at	AY029561.1	hypothetical LOC542071	-	1e-3	At5g35330	MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.84	ZmAffx.185.1.A1_at	AI668356	-	-	1e+1	At5g58220	TTL (Transthyretin-Like protein)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.91	Zm.16892.3.S1_a_at	CB281906	calmodulin binding protein	-	5e-3	At3g22190	IQD5 (IQ-domain 5)	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.84	Zm.4273.1.A1_at	CF626426	hypothetical protein LOC100217188	-	6e-15	At1g79930	HSP91	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.80	ZmAffx.940.1.A1_at	AI820350	Hypothetical protein LOC100217004	-	8e-4	At4g00690	ULP1B (UB-LIKE PROTEASE 1B)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.89	RPTR-Zm-J01347-2_at	RPTR-Zm-J01347-2	-	-			-	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.90	Zm.16502.5.A1_at	AI586439	hypothetical protein LOC100280237	-	1e-12	At5g61780	tudor domain-containing protein / nuclease family protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.85	ZmAffx.1509.1.S1_at	11990232-51	-	-	2e-106	Atcg00730	-	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.89	Zm.17312.1.A1_at	CK369501	-	-	5e+0	At5g39700	MYB89 (myb domain protein 89)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.90	RPTR-Zm-J01347-1_at	RPTR-Zm-J01347-1	-	-			-	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.84	ZmAffx.544.1.S1_at	AI712096	-	-	3e+0	At1g04800	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.91	Zm.2165.1.A1_at	BM072875	hypothetical protein LOC100278701	-	6e+0	At5g25390	SHN2 (shine2)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.87	Zm.17754.1.A1_at	CK826899	-	-	2e+0	At4g17310	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.89	Zm.9514.1.A1_at	BM269476	hypothetical protein LOC100279704	-	3e-1	At2g14500	F-box family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.91	Zm.3966.1.A1_at	AI795713	-	-	5e-2	At1g56310	3'-5' exonuclease domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.87	ZmAffx.169.1.A1_at	AI664986	-	-	2e-1	At2g24765	ARF3 (ADP-RIBOSYLATION FACTOR 3)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.86	Zm.17767.1.A1_at	CK371577	hypothetical protein LOC100191424	-	4e-1	At2g14365	LCR84 (Low-molecular-weight cysteine-rich 84)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.92	Zm.15780.1.A1_at	CD484576	-	-	4e+0	At3g01472	CPuORF33 (Conserved peptide upstream open reading frame 33)	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.87	Zm.34.2.A1_at	AY103769.1	nuclear cap-binding protein subunit 2	-	1e-13	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.4	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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