Co-expression analysis

Gene ID	Zm.17956.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g20570: plastocyanin-like domain-containing protein (HF=2e+0)
Module size	24 genes
NF	0.44
%ile	53.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.87	96.4	0.95	Zm.17956.1.A1_at	CF637428	-	-	2e+0	At3g20570	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.96	Zm.5792.2.A1_at	AY106767.1	-	-	1e+0	At4g39990	RABA4B (RAB GTPASE HOMOLOG A4B)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.96	Zm.1685.1.A1_at	CF059093	hypothetical protein LOC100192950	-	6e-3	At3g18060	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.97	Zm.2321.6.A1_at	AI677502	hypothetical protein LOC100277354	-	3e-3	At3g28970	AAR3 (antiauxin-resistant 3)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.97	Zm.8336.1.S1_x_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.10790.1.S1_at	AY106615.1	glutamyl-tRNA reductase1 /// hypothetical protein LOC100191548	-	4e-6	At1g58290	HEMA1	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.11977.1.A1_at	BM382289	-	-	2e+1	At5g20650	COPT5	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.96	Zm.13744.1.S1_at	AY106035.1	guanine nucleotide-binding protein alpha-1 subunit	-	2e-14	At2g26300	GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.245.1.S1_at	AY108063.1	glutathione transferase6	-	2e-1	At1g27130	ATGSTU13 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 13)	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.97	Zm.3775.1.A1_at	AY103856.1	chaperonin	-	3e-5	At1g14980	CPN10 (CHAPERONIN 10)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.19160.1.S1_at	CO522402	thioredoxin-like protein 1	-	6e-7	At3g04780	-	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.19241.1.A1_at	CO517742	WW domain-containing oxidoreductase	-	6e+0	At4g22160	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.2330.1.S1_at	BE552610	-	-	4e-15	At2g42120	POLD2 (DNA POLYMERASE DELTA SMALL SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.96	Zm.11980.1.A1_at	CO531447	-	-	4e-1	At5g27090	AGL54	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.19306.1.A1_at	AI664819	hypothetical protein LOC100193355	-	6e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.11255.1.S1_at	AY107659.1	hypothetical protein LOC100217136	-	3e-32	At5g40200	DegP9 (DegP protease 9)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.14995.1.A1_at	BQ538186	-	-	2e+0	At1g62960	ACS10 (ACC SYNTHASE 10)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.13112.2.S1_a_at	AI714527	-	-	2e-7	At5g63420	emb2746 (embryo defective 2746)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.17990.1.S1_at	BG837629	hypothetical protein LOC100275286	-	2e+0	At5g54460	wound-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.13871.1.A1_at	AF099434.1	R2R3MYB-domain protein	-	2e-5	At1g08810	MYB60 (myb domain protein 60)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.6569.2.S1_a_at	AY107413.1	hypothetical protein LOC100276303	-	1e+0	At3g59900	ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.13427.1.S1_at	AF124738.1	hypothetical protein LOC100194389	-	1e-7	At4g21520	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.16306.1.A1_at	AY111557.1	hypothetical protein LOC100273693	-	2e+0	At1g07140	SIRANBP	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.10482.1.S1_at	AW330949	hypothetical protein LOC100280002	-	9e-1	At1g04680	pectate lyase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.3	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM258204	Wf9 11-day seedling aerial tissue biological replicate 2	GSE10237	Gene expression variation among eight maize inbreds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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