Co-expression analysis

Gene ID	Zm.17942.1.A1_at
Gene name	hypothetical protein LOC100192912
Homology with Arabidopsis	Similar to At5g65780: ATBCAT-5 (HF=1e-7)
Module size	26 genes
NF	0.38
%ile	41.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.96	Zm.17942.1.A1_at	CK827838	hypothetical protein LOC100192912	-	1e-7	At5g65780	ATBCAT-5	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.96	Zm.10803.1.S1_at	BQ577732	desiccation-associated protein	-	4e-5	At4g04900	RIC10 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.2378.1.A1_at	BQ485596	-	-	8e-10	At1g70750	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.9560.1.A1_at	BM382073	m17 protein	-	3e-2	At1g77080	-	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.5599.1.A1_at	CF649483	O-methyltransferase ZRP4	-	7e-1	At1g51990	O-methyltransferase family 2 protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.18045.1.A1_at	BM080270	-	-	8e-4	At1g22180	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.1305.1.S1_at	AF034945.1	glycine-rich RNA binding protein	-	1e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.18124.1.S1_at	AY104334.1	hypothetical protein LOC100275630	-	1e+0	At1g32560	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.6453.1.S1_at	AY106427.1	-	-	3e-1	At5g33390	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.96	Zm.5609.1.A1_at	CF632012	COP9 signalosome complex subunit 3	-	1e-1	At1g20816	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.1704.1.S1_at	BM380131	hypothetical protein LOC100217212	-	1e+0	At1g78190	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.5616.1.A1_at	CK368985	threonine endopeptidase	-	2e+0	At4g12270	copper amine oxidase family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.15975.1.A1_at	AY109347.1	-	-	5e-2	At4g17560	ribosomal protein L19 family protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.4883.1.A1_at	AY107709.1	Hypothetical protein LOC100216906	-	2e-5	At1g07530	SCL14 (SCARECROW-LIKE 14)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.15194.1.A1_at	BM334114	-	-	4e+0	At1g16025	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.16475.3.S1_at	CF019135	-	-	2e-7	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.3393.1.A1_at	CF634160	-	-	1e+0	At5g15530	BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.96	Zm.12627.1.S1_at	CA831553	-	-	1e+0	At1g43630	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.4493.1.A1_at	CF015022	hypothetical protein LOC100279480	-	4e-1	At2g29780	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.16785.1.A1_a_at	AF032468.1	hypothetical protein LOC100272466 /// ubiquitin-conjugating enzyme protein E2	-	7e-37	At5g59300	UBC7 (UBIQUITIN CARRIER PROTEIN 7)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.4758.1.S1_at	AY111436.1	-	-	1e+0	At4g17890	AGD8 (ARF-GAP DOMAIN 8)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.6332.1.S1_at	AI691425	hypothetical protein LOC100275800	-	5e-1	At4g05240	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.14496.1.A1_at	CF014750	sesquiterpene cyclase-like	-	1e+0	At5g46710	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.96	Zm.16573.1.A1_at	CA398704	-	-	2e+0	At1g78710	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.17862.1.A1_at	CO520595	serine/threonine-protein kinase WNK4	-	5e+0	At4g09440	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.9661.1.A1_at	BM335503	-	-	4e+0	At5g04470	SIM (SIAMESE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.1	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.8	88.9	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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