Co-expression analysis

Gene ID	Zm.17858.1.A1_at
Gene name	hypothetical protein AY111541
Homology with Arabidopsis	Similar to At3g53620: AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4) (HF=2e+0)
Module size	34 genes
NF	0.33
%ile	31.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.8	0.93	Zm.17858.1.A1_at	AY111541.1	hypothetical protein AY111541	-	2e+0	At3g53620	AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.95	Zm.13628.1.S1_at	CD437947	hypothetical protein LOC100216717	-	3e-6	At3g12680	HUA1 (ENHANCER OF AG-4 1)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.95	Zm.24.2.S1_a_at	AJ001635.1	viviparous1	-	3e+0	At2g40765	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.95	Zm.4809.2.S1_at	AY107259.1	protein disulfide isomerase	-	3e+0	At1g35620	ATPDIL5-2 (PDI-LIKE 5-2)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.95	Zm.15480.1.S1_at	BM349789	-	-	1e+0	At4g30064	LCR61 (Low-molecular-weight cysteine-rich 61)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.3961.1.S1_at	CK370362	hypothetical protein LOC100272531	-	3e-7	At1g70290	ATTPS8	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.94	Zm.15069.1.A1_at	CF004181	hypothetical protein LOC100280203	-	2e-12	At2g44350	ATCS	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.18347.1.A1_at	BM078855	hypothetical protein LOC100192822	-	1e-11	At1g21480	exostosin family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.14428.1.S1_at	AY106109.1	cyclin-L2	-	4e+0	At4g27410	RD26 (RESPONSIVE TO DESICCATION 26)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.18270.1.A1_at	CA399376	Hypothetical protein LOC100194036	-	3e-6	At4g37200	HCF164	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.96	Zm.4090.1.A1_at	AI834563	-	-	4e-1	At2g41080	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.10210.1.A1_at	CF627510	-	-	2e-2	At2g47460	MYB12 (MYB DOMAIN PROTEIN 12)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.95	Zm.264.2.A1_x_at	CF012670	acetyl-coenzyme A carboxylase	-	8e+0	At5g02890	transferase family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.94	Zm.5206.3.A1_a_at	AI714495	hexokinase	-	3e-2	At3g55640	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.96	Zm.10865.1.A1_at	CF638037	hypothetical protein LOC100275271	-	1e-6	At2g44090	-	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.96	Zm.7551.1.A1_at	BM379939	peptidyl-prolyl cis-trans isomerase	-	3e-1	At3g56070	ROC2 (ROTAMASE CYCLOPHILIN 2)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.96	Zm.16513.6.A1_at	AI834422	hypothetical protein LOC100191561	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.96	Zm.4618.1.A1_at	AW066311	pre-mRNA-splicing factor ISY1	-	4e-7	At3g18790	-	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.96	Zm.7402.1.A1_at	AY106816.1	IDP1704 protein /// hypothetical protein LOC100193772	-	2e+0	At1g12780	UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.95	Zm.6989.1.S1_at	AW506741	-	-	1e+0	At4g23340	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.7689.1.A1_x_at	BM079495	CDK-activating kinase assembly factor MAT1 family protein	-	2e+1	Atmg01290	-	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.14125.1.A1_at	CO533246	hypothetical protein LOC100273725	-	3e-4	At3g51280	male sterility MS5, putative	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.95	Zm.17589.1.A1_at	CK144401	protein binding protein	-	3e-2	At1g77830	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.11624.1.A1_at	CF637935	thioredoxin H-type	-	3e-1	At3g51030	ATTRX1	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.17858.1.S1_at	AY111541.1	hypothetical protein AY111541	-	2e+0	At3g53620	AtPPa4 (Arabidopsis thaliana pyrophosphorylase 4)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.96	Zm.74.1.S2_at	CF006418	annexin p35	-	2e-1	At5g10220	ANN6 (ANNEXIN ARABIDOPSIS 6)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.554.1.A1_at	CF630610	glutathione transferase28	-	1e-1	At1g17170	ATGSTU24 (GLUTATHIONE S-TRANSFERASE TAU 24)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.95	Zm.17252.1.A1_at	CK369958	-	-	5e+0	At4g08260	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.96	Zm.1033.1.A1_at	BE640167	-	-	1e+0	At3g50780	-	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.95	Zm.3685.1.S1_at	CF040303	hypothetical protein LOC100191949	-	2e+0	At3g56110	PRA1.B1 (PRENYLATED RAB ACCEPTOR 1.B1)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.96	Zm.4092.1.A1_at	AI834566	hypothetical protein LOC100193567	-	2e-5	At3g53940	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.95	Zm.17642.1.A1_at	CF038814	hypothetical protein LOC100193587	-	2e+0	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.95	Zm.6161.1.A1_at	AW091191	hypothetical protein LOC100193997	-	2e-1	At1g78150	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.95	Zm.4064.1.A1_at	AI834361	Hypothetical protein LOC100193331	-	2e-1	At3g09700	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.6	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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