Co-expression analysis

Gene ID Zm.17843.2.A1_at
Gene name hypothetical protein LOC100216964
Homology with ArabidopsisSimilar to At2g47910: CRR6 (chlororespiratory reduction 6) (HF=6e-1)
Module size 13 genes
NF 0.52
%ile 68.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5166.40.96Zm.17843.2.A1_atCD999046hypothetical protein LOC100216964-6e-1At2g47910CRR6 (chlororespiratory reduction 6)O.I.H.G.S.X.
0.6986.50.97Zm.18352.1.S1_atCO527044glucan endo-1,3-beta-glucosidase, acidic isoform-1e+1At5g62470MYB96 (myb domain protein 96)O.I.H.G.S.X.
0.6785.80.96Zm.13250.1.S1_atCN844210Zea mays MADS14-3e-2At2g03710SEP4 (SEPALLATA 4)O.I.H.G.S.X.
0.5775.10.96Zm.7397.1.A1_atBQ539216hypothetical protein LOC100277233-5e-4At3g05550hypoxia-responsive family proteinO.I.H.G.S.X.
0.5571.60.97Zm.7826.2.A1_atAY107684.1--5e+0At4g22517-O.I.H.G.S.X.
0.5469.80.97Zm.18351.1.S1_atCO529439--2e+0At2g21140ATPRP2 (PROLINE-RICH PROTEIN 2)O.I.H.G.S.X.
0.5065.70.97Zm.7727.4.S1_s_atCF972403polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin-2e-102At4g05320UBQ10 (POLYUBIQUITIN 10)O.I.H.G.S.X.
0.4861.30.98Zm.13016.1.A1_atCA403346hypothetical protein LOC100277160-2e+0At1g22160senescence-associated protein-relatedO.I.H.G.S.X.
0.4759.90.97Zm.12958.1.A1_atCA402421hypothetical protein LOC100217276-9e+0At5g43245unknown proteinO.I.H.G.S.X.
0.4658.40.98Zm.6606.1.A1_atAI467702hypothetical protein LOC100272956-8e-7At3g53500zinc knuckle (CCHC-type) family proteinO.I.H.G.S.X.
0.4455.70.98Zm.3358.2.S1_atAY105740.1--7e+0At2g44420protein N-terminal asparagine amidohydrolase family proteinO.I.H.G.S.X.
0.4048.50.97Zm.14349.1.S1_atCO532249hypothetical protein LOC100272339-3e+0At5g160103-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family proteinO.I.H.G.S.X.
0.2928.10.97Zm.1129.1.A1_atBE510577--1e+0At1g80730ZFP1 (ZINC-FINGER PROTEIN 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.798.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.498.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320445protocol: mRNA - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM375788Deep-sowing 10d treatment Control, biological rep1GSE15048Gibberellin-induced gene expression in maize mesocotyl under deep-sowing conditionLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage