Co-expression analysis

Gene ID	Zm.17816.2.S1_a_at
Gene name	tRNA pseudouridine synthase family protein
Homology with Arabidopsis	Similar to At1g76120: tRNA pseudouridine synthase family protein (HF=2e-2)
Module size	6 genes
NF	0.58
%ile	78.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	1.00	Zm.17816.2.S1_a_at	CK144883	tRNA pseudouridine synthase family protein	-	2e-2	At1g76120	tRNA pseudouridine synthase family protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	1.00	Zm.1738.1.S1_at	AF034947.1	inorganic pyrophosphatase	-	3e-40	At4g01480	AtPPa5 (Arabidopsis thaliana pyrophosphorylase 5)	O.I.	H.G.	S.X.	Please select
0.60	77.8	1.00	Zm.9674.1.A1_at	BM350297	-	-	4e-7	At5g13080	WRKY75	O.I.	H.G.	S.X.	Please select
0.60	77.8	1.00	Zm.18392.1.A1_at	CO533252	-	-	7e+0	At2g27130	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	Zm.10079.1.A1_a_at	CK370542	hypothetical protein LOC100193809	-	2e-3	At4g32480	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	1.00	Zm.13938.2.S1_at	CK368471	-	-	4e-23	At2g19740	60S ribosomal protein L31 (RPL31A)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.0	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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