CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.17814.1.S1_at

Gene name UPF0737 protein 1
Homology with Arabidopsis Similar to At5g14110: unknown protein (HF=6e-1)

Module size 37 genes

NF 0.34

%ile 33.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 0.98 Zm.17814.1.S1_at CD446349 UPF0737 protein 1 - 6e-1 At5g14110 unknown protein O.I. H.G. S.X.
0.55 71.6 0.99 Zm.3693.1.A1_at AI065909 16.9 kDa class I heat shock protein 1 - 3e-8 At1g53540 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) O.I. H.G. S.X.
0.49 61.9 0.99 - - O.I. H.G. S.X.
0.45 56.4 0.99 Zm.571.1.S1_at AF296122.1 sesquiterpene cyclase1 - 3e-1 At3g07273 unknown protein O.I. H.G. S.X.
0.45 56.4 0.99 ZmAffx.511.1.A1_at AI692026 - - 8e-1 At1g38630 unknown protein O.I. H.G. S.X.
0.45 56.4 0.99 Zm.4656.1.A1_at CF635280 IDP334 protein - 4e-35 At1g16890 ubiquitin-conjugating enzyme, putative O.I. H.G. S.X.
0.44 55.7 0.99 Zm.2584.1.A1_at CF627035 hypothetical protein LOC100194124 - 1e-13 At3g05550 hypoxia-responsive family protein O.I. H.G. S.X.
0.42 51.3 0.99 Zm.11475.1.A1_a_at BQ539206 hypothetical protein LOC100273223 - 1e-3 At2g45330 emb1067 (embryo defective 1067) O.I. H.G. S.X.
0.42 51.3 0.99 Zm.7304.1.A1_x_at BM350347 hypothetical protein LOC100275336 - 3e-1 At1g31335 unknown protein O.I. H.G. S.X.
0.39 45.6 0.99 Zm.5728.1.S1_at CF635798 hypothetical protein LOC100272678 - 2e-1 At5g57950 26S proteasome regulatory subunit, putative O.I. H.G. S.X.
0.39 45.6 0.99 Zm.3347.1.A1_at CK986004 Cystatin-like - 5e-1 At5g12140 ATCYS1 (A. thaliana cystatin-1) O.I. H.G. S.X.
0.36 41.3 0.99 Zm.15546.1.A1_at CD219276 hypothetical protein LOC100276392 - 1e+0 At5g01734 unknown protein O.I. H.G. S.X.
0.36 41.3 0.99 Zm.3406.1.S1_at AY566301.1 4-coumarate coenzyme A ligase - 7e-2 At1g51680 4CL1 (4-COUMARATE:COA LIGASE 1) O.I. H.G. S.X.
0.36 41.3 0.99 Zm.16189.3.S1_at CD484948 - - 4e-1 At2g40290 eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative O.I. H.G. S.X.
0.36 41.3 0.99 Zm.10487.1.S1_at CF009695 desiccation-associated protein - 1e-1 At1g12665 - O.I. H.G. S.X.
0.36 41.3 0.99 Zm.4814.3.A1_at CD440511 elongation factor 1-beta - 2e-10 At1g30230 elongation factor 1-beta / EF-1-beta O.I. H.G. S.X.
0.35 38.9 0.99 ZmAffx.780.1.S1_at AI746266 - - 8e-1 At1g08350 endomembrane protein 70 family protein O.I. H.G. S.X.
0.35 38.9 0.99 Zm.3859.1.A1_at BM335999 ubiquitin-conjugating enzyme E2-17 kDa - 4e-57 At2g02760 ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) O.I. H.G. S.X.
0.34 37.2 0.99 Zm.19159.1.A1_at CO530777 - - 2e-2 At1g22850 - O.I. H.G. S.X.
0.34 37.2 0.99 Zm.1968.1.A1_at CF244101 MGD2 - 1e-20 At2g11810 MGDC O.I. H.G. S.X.
0.33 36.0 0.99 ZmAffx.190.1.A1_at AI881316 - - 5e-2 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) O.I. H.G. S.X.
0.31 31.6 0.99 Zm.19.1.S1_at M57249.1 phospholipid transfer protein homolog1 - 5e+0 At4g32105 galactosyltransferase O.I. H.G. S.X.
0.30 29.8 0.99 Zm.3153.3.S1_a_at CF624577 B12D protein - 1e-3 At1g20440 COR47 (COLD-REGULATED 47) O.I. H.G. S.X.
0.30 29.8 0.99 ZmAffx.543.1.S1_at AI712085 - - 3e+0 At4g03510 RMA1 O.I. H.G. S.X.
0.30 29.8 0.99 Zm.16779.1.A1_a_at CF626512 hypothetical protein LOC100216924 /// hypothetical protein LOC100273958 - 2e-3 At5g48810 CB5-D (CYTOCHROME B5 ISOFORM D) O.I. H.G. S.X.
0.29 28.1 0.99 Zm.18090.1.A1_at AY106351.1 - - 1e-8 At1g15880 GOS11 (golgi snare 11) O.I. H.G. S.X.
0.29 28.1 0.99 Zm.6666.1.S1_at CF049927 hypothetical protein LOC100192879 - 2e-23 At1g64520 RPN12a (Regulatory Particle non-ATPase 12a) O.I. H.G. S.X.
0.28 28.1 0.99 Zm.1742.1.S1_at AW424599 UDP-glucose 4-epimerase GEPI48 - 6e-14 At4g10960 UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5) O.I. H.G. S.X.
0.28 28.1 0.99 Zm.6017.1.A1_at AI666208 hypothetical protein LOC100274747 /// hypothetical protein LOC100277021 - 2e+0 At4g08230 glycine-rich protein O.I. H.G. S.X.
0.25 21.3 0.99 Zm.3069.1.A1_at CF010027 hypothetical protein LOC100192787 - 2e+0 At4g27630 GTG2 (GPCR-TYPE G PROTEIN 2) O.I. H.G. S.X.
0.25 21.3 0.99 Zm.16049.4.A1_at BE475781 - - 1e-4 At5g03850 40S ribosomal protein S28 (RPS28B) O.I. H.G. S.X.
0.24 19.8 0.99 ZmAffx.1036.1.A1_at AI881726 - - 1e-1 At2g43795 unknown protein O.I. H.G. S.X.
0.24 19.8 0.99 ZmAffx.1089.1.A1_at AW052986 hydrolase - 3e+0 At2g43080 AT-P4H-1 (A. THALIANA P4H ISOFORM 1) O.I. H.G. S.X.
0.20 14.2 0.99 Zm.2914.1.S1_at AW091221 - - 4e-1 At1g23410 ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA) O.I. H.G. S.X.
0.20 14.2 0.99 Zm.4390.1.A1_at AI714448 hypothetical protein LOC100191618 - 1e-8 At3g06190 BPM2 (BTB-POZ AND MATH DOMAIN 2) O.I. H.G. S.X.
0.19 12.8 0.99 Zm.1124.1.A1_at AA979998 uridine/cytidine kinase-like 1 - 6e-76 At5g40870 AtUK/UPRT1 (Uridine kinase/Uracil phosphoribosyltransferase 1) O.I. H.G. S.X.
0.16 9.4 0.99 ZmAffx.108.1.S1_at AI665554 Hypothetical protein LOC100191707 - 8e-1 At5g39640 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.9	0.98	Zm.17814.1.S1_at	CD446349	UPF0737 protein 1	-	6e-1	At5g14110	unknown protein	O.I.	H.G.	S.X.
0.55	71.6	0.99	Zm.3693.1.A1_at	AI065909	16.9 kDa class I heat shock protein 1	-	3e-8	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	O.I.	H.G.	S.X.
0.49	61.9	0.99			-	-				O.I.	H.G.	S.X.
0.45	56.4	0.99	Zm.571.1.S1_at	AF296122.1	sesquiterpene cyclase1	-	3e-1	At3g07273	unknown protein	O.I.	H.G.	S.X.
0.45	56.4	0.99	ZmAffx.511.1.A1_at	AI692026	-	-	8e-1	At1g38630	unknown protein	O.I.	H.G.	S.X.
0.45	56.4	0.99	Zm.4656.1.A1_at	CF635280	IDP334 protein	-	4e-35	At1g16890	ubiquitin-conjugating enzyme, putative	O.I.	H.G.	S.X.
0.44	55.7	0.99	Zm.2584.1.A1_at	CF627035	hypothetical protein LOC100194124	-	1e-13	At3g05550	hypoxia-responsive family protein	O.I.	H.G.	S.X.
0.42	51.3	0.99	Zm.11475.1.A1_a_at	BQ539206	hypothetical protein LOC100273223	-	1e-3	At2g45330	emb1067 (embryo defective 1067)	O.I.	H.G.	S.X.
0.42	51.3	0.99	Zm.7304.1.A1_x_at	BM350347	hypothetical protein LOC100275336	-	3e-1	At1g31335	unknown protein	O.I.	H.G.	S.X.
0.39	45.6	0.99	Zm.5728.1.S1_at	CF635798	hypothetical protein LOC100272678	-	2e-1	At5g57950	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.
0.39	45.6	0.99	Zm.3347.1.A1_at	CK986004	Cystatin-like	-	5e-1	At5g12140	ATCYS1 (A. thaliana cystatin-1)	O.I.	H.G.	S.X.
0.36	41.3	0.99	Zm.15546.1.A1_at	CD219276	hypothetical protein LOC100276392	-	1e+0	At5g01734	unknown protein	O.I.	H.G.	S.X.
0.36	41.3	0.99	Zm.3406.1.S1_at	AY566301.1	4-coumarate coenzyme A ligase	-	7e-2	At1g51680	4CL1 (4-COUMARATE:COA LIGASE 1)	O.I.	H.G.	S.X.
0.36	41.3	0.99	Zm.16189.3.S1_at	CD484948	-	-	4e-1	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	O.I.	H.G.	S.X.
0.36	41.3	0.99	Zm.10487.1.S1_at	CF009695	desiccation-associated protein	-	1e-1	At1g12665	-	O.I.	H.G.	S.X.
0.36	41.3	0.99	Zm.4814.3.A1_at	CD440511	elongation factor 1-beta	-	2e-10	At1g30230	elongation factor 1-beta / EF-1-beta	O.I.	H.G.	S.X.
0.35	38.9	0.99	ZmAffx.780.1.S1_at	AI746266	-	-	8e-1	At1g08350	endomembrane protein 70 family protein	O.I.	H.G.	S.X.
0.35	38.9	0.99	Zm.3859.1.A1_at	BM335999	ubiquitin-conjugating enzyme E2-17 kDa	-	4e-57	At2g02760	ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2)	O.I.	H.G.	S.X.
0.34	37.2	0.99	Zm.19159.1.A1_at	CO530777	-	-	2e-2	At1g22850	-	O.I.	H.G.	S.X.
0.34	37.2	0.99	Zm.1968.1.A1_at	CF244101	MGD2	-	1e-20	At2g11810	MGDC	O.I.	H.G.	S.X.
0.33	36.0	0.99	ZmAffx.190.1.A1_at	AI881316	-	-	5e-2	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	O.I.	H.G.	S.X.
0.31	31.6	0.99	Zm.19.1.S1_at	M57249.1	phospholipid transfer protein homolog1	-	5e+0	At4g32105	galactosyltransferase	O.I.	H.G.	S.X.
0.30	29.8	0.99	Zm.3153.3.S1_a_at	CF624577	B12D protein	-	1e-3	At1g20440	COR47 (COLD-REGULATED 47)	O.I.	H.G.	S.X.
0.30	29.8	0.99	ZmAffx.543.1.S1_at	AI712085	-	-	3e+0	At4g03510	RMA1	O.I.	H.G.	S.X.
0.30	29.8	0.99	Zm.16779.1.A1_a_at	CF626512	hypothetical protein LOC100216924 /// hypothetical protein LOC100273958	-	2e-3	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	O.I.	H.G.	S.X.
0.29	28.1	0.99	Zm.18090.1.A1_at	AY106351.1	-	-	1e-8	At1g15880	GOS11 (golgi snare 11)	O.I.	H.G.	S.X.
0.29	28.1	0.99	Zm.6666.1.S1_at	CF049927	hypothetical protein LOC100192879	-	2e-23	At1g64520	RPN12a (Regulatory Particle non-ATPase 12a)	O.I.	H.G.	S.X.
0.28	28.1	0.99	Zm.1742.1.S1_at	AW424599	UDP-glucose 4-epimerase GEPI48	-	6e-14	At4g10960	UGE5 (UDP-D-glucose/UDP-D-galactose 4-epimerase 5)	O.I.	H.G.	S.X.
0.28	28.1	0.99	Zm.6017.1.A1_at	AI666208	hypothetical protein LOC100274747 /// hypothetical protein LOC100277021	-	2e+0	At4g08230	glycine-rich protein	O.I.	H.G.	S.X.
0.25	21.3	0.99	Zm.3069.1.A1_at	CF010027	hypothetical protein LOC100192787	-	2e+0	At4g27630	GTG2 (GPCR-TYPE G PROTEIN 2)	O.I.	H.G.	S.X.
0.25	21.3	0.99	Zm.16049.4.A1_at	BE475781	-	-	1e-4	At5g03850	40S ribosomal protein S28 (RPS28B)	O.I.	H.G.	S.X.
0.24	19.8	0.99	ZmAffx.1036.1.A1_at	AI881726	-	-	1e-1	At2g43795	unknown protein	O.I.	H.G.	S.X.
0.24	19.8	0.99	ZmAffx.1089.1.A1_at	AW052986	hydrolase	-	3e+0	At2g43080	AT-P4H-1 (A. THALIANA P4H ISOFORM 1)	O.I.	H.G.	S.X.
0.20	14.2	0.99	Zm.2914.1.S1_at	AW091221	-	-	4e-1	At1g23410	ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA)	O.I.	H.G.	S.X.
0.20	14.2	0.99	Zm.4390.1.A1_at	AI714448	hypothetical protein LOC100191618	-	1e-8	At3g06190	BPM2 (BTB-POZ AND MATH DOMAIN 2)	O.I.	H.G.	S.X.
0.19	12.8	0.99	Zm.1124.1.A1_at	AA979998	uridine/cytidine kinase-like 1	-	6e-76	At5g40870	AtUK/UPRT1 (Uridine kinase/Uracil phosphoribosyltransferase 1)	O.I.	H.G.	S.X.
0.16	9.4	0.99	ZmAffx.108.1.S1_at	AI665554	Hypothetical protein LOC100191707	-	8e-1	At5g39640	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.5 98.7 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4 98.7 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9 98.6 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7 98.6 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0 98.5 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8 98.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8 98.3 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7 98.3 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4 98.3 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3 96.1 GSM205367 Mo17xB73 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
12.5	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

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Gene ID	Zm.17814.1.S1_at
Gene name	UPF0737 protein 1
Homology with Arabidopsis	Similar to At5g14110: unknown protein (HF=6e-1)
Module size	37 genes
NF	0.34
%ile	33.6

Co-expression analysis

Gene ID Zm.17814.1.S1_at Gene name UPF0737 protein 1 Homology with ArabidopsisSimilar to At5g14110: unknown protein (HF=6e-1) Module size 37 genes NF 0.34 %ile 33.6

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.17814.1.S1_at

Gene name UPF0737 protein 1
Homology with Arabidopsis Similar to At5g14110: unknown protein (HF=6e-1)

Module size 37 genes

NF 0.34

%ile 33.6

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera