Co-expression analysis

Gene ID Zm.17728.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g25573: unknown protein (HF=1e+0)
Module size 11 genes
NF 0.38
%ile 42.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.96Zm.17728.1.A1_atCF631523--1e+0At3g25573unknown proteinO.I.H.G.S.X.
0.4455.70.97Zm.10119.1.A1_atAW330816hypothetical protein LOC100274094-6e-9At2g47910CRR6 (chlororespiratory reduction 6)O.I.H.G.S.X.
0.4251.30.97Zm.13303.1.S1_atCA827309--4e+0At1g27390TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2)O.I.H.G.S.X.
0.4048.50.98Zm.12674.1.A1_atCN845329--5e-5At1g34350unknown proteinO.I.H.G.S.X.
0.3844.20.97Zm.10098.1.A1_atCO531187hypothetical protein LOC100272958-2e-2At2g44060late embryogenesis abundant family protein / LEA family proteinO.I.H.G.S.X.
0.3641.30.98Zm.17862.1.A1_atCO520595serine/threonine-protein kinase WNK4-5e+0At4g09440unknown proteinO.I.H.G.S.X.
0.3437.20.97ZmAffx.785.1.S1_atAI759084--3e+0At5g51780basix helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3233.40.97ZmAffx.777.1.A1_atAI746253hypothetical protein LOC100191464-2e-1At5g11440CID5O.I.H.G.S.X.
0.3131.60.98Zm.12433.1.S1_atAY105016.1tyrosyl-tRNA synthetase-4e-18At2g33840tRNA synthetase class I (W and Y) family proteinO.I.H.G.S.X.
0.2928.10.97Zm.15416.1.A1_atCD448025--2e-1At1g68862unknown proteinO.I.H.G.S.X.
0.169.40.97Zm.12844.2.A1_a_atCF623983hypothetical protein LOC100194377-4e-10At5g16540ZFN3 (ZINC FINGER NUCLEASE 3)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.498.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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