Co-expression analysis

Gene ID	Zm.17720.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g12340: - (HF=9e-1)
Module size	8 genes
NF	0.50
%ile	64.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.54	69.8	0.92	Zm.17720.1.A1_at	BM340967	-	-	9e-1	At4g12340	-	O.I.	H.G.	S.X.	Please select
0.75	90.8	0.95	Zm.17327.2.S1_at	CF628822	-	-	1e+0	At3g04640	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.96	Zm.1180.1.S1_at	BE512002	PHD finger protein	-	1e-8	At5g26210	AL4 (ALFIN-LIKE 4)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.96	Zm.2980.1.A1_at	AW120459	-	-	2e+0	At1g29140	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.95	Zm.8698.1.A1_a_at	BM341365	-	-	4e-1	At3g52510	-	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.95	Zm.6889.1.A1_at	AY109809.1	-	-	1e-4	At1g64570	-	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.94	Zm.17825.1.S1_at	CK368617	-	-	3e-1	At4g28180	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.94	Zm.435.1.S1_at	AF069910.1	pyruvate dehydrogenase E1 beta subunit isoform 3	-	3e-28	At5g50850	MAB1 (MACCI-BOU)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.5	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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