Co-expression analysis

Gene ID	Zm.17686.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g52270: vesicle transport protein-related (HF=3e-1)
Module size	6 genes
NF	0.14
%ile	9.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.94	Zm.17686.1.A1_at	CF632894	-	-	3e-1	At5g52270	vesicle transport protein-related	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.94	Zm.12626.2.A1_a_at	BG841446	craniofacial development protein 1	-	3e-1	At1g01640	speckle-type POZ protein-related	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.94	Zm.16207.1.S1_at	AY109575.1	-	-	6e-43	At1g23190	phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.93	Zm.18571.1.A1_at	CO518311	Hypothetical protein LOC100217207	-	1e+0	At5g61790	calnexin 1 (CNX1)	O.I.	H.G.	S.X.	Please select
0.08	3.4	0.93	Zm.8703.1.A1_at	BM337839	-	-	1e+0	At4g25330	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.94	Zm.899.1.A1_at	CK370176	esterase	-	6e-7	At1g29840	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.8	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1620495_at, orthologous to the query gene, Zm.17686.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	79.8	1620495_at	At5g52270	hypothetical protein LOC100255760	-	5e-9	At1g67350	unknown protein	O.I.	H.G.	S.X.	Please select
0.86	95.1	1622214_at	At5g52270	similar to NADH-ubiquinone oxidoreductase-related	-	5e-43	At3g62790	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.77	92.3	1620417_at	At5g52270	-	-	1e-19	At2g29530	mitochondrial import inner membrane translocase (TIM10)	O.I.	H.G.	S.X.	Please select
0.77	92.3	1620467_s_at	At5g52270	hypothetical protein LOC100250756	-	2e-9	At1g49140	NADH-ubiquinone oxidoreductase-related	O.I.	H.G.	S.X.	Please select
0.71	89.5	1608489_s_at	At5g52270	hypothetical protein LOC100246253	-	2e-16	At2g44620	MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.67	87.9	1611461_at	At5g52270	hypothetical protein LOC100246984	-	1e-37	At4g34700	complex 1 family protein / LVR family protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	1612623_at	At5g52270	hypothetical protein LOC100247134	-	1e-4	At5g47890	NADH-ubiquinone oxidoreductase B8 subunit, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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