Co-expression analysis

Gene ID	Zm.17686.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g52270: vesicle transport protein-related (HF=3e-1)
Module size	6 genes
NF	0.14
%ile	9.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.94	Zm.17686.1.A1_at	CF632894	-	-	3e-1	At5g52270	vesicle transport protein-related	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.94	Zm.12626.2.A1_a_at	BG841446	craniofacial development protein 1	-	3e-1	At1g01640	speckle-type POZ protein-related	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.94	Zm.16207.1.S1_at	AY109575.1	-	-	6e-43	At1g23190	phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.93	Zm.18571.1.A1_at	CO518311	Hypothetical protein LOC100217207	-	1e+0	At5g61790	calnexin 1 (CNX1)	O.I.	H.G.	S.X.	Please select
0.08	3.4	0.93	Zm.8703.1.A1_at	BM337839	-	-	1e+0	At4g25330	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.94	Zm.899.1.A1_at	CK370176	esterase	-	6e-7	At1g29840	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
18.8	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, Gma.8294.1.S1_s_at, orthologous to the query gene, Zm.17686.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.8	Gma.8294.1.S1_s_at	At5g52270	-	-	4e-1	At1g67350	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	88.9	Gma.5057.1.S1_a_at	At5g52270	-	-	2e-25	At5g13440	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.	Please select
0.60	80.7	Gma.7266.1.S1_at	At5g52270	-	-	4e+0	At4g16850	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	Gma.3929.1.A1_at	At5g52270	-	-	4e-10	At5g18400	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	GmaAffx.15307.1.S1_at	At5g52270	-	-	9e-44	At4g35360	pantothenate kinase family protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.16334.2.S1_at	At5g52270	-	-	4e-29	At1g80230	cytochrome c oxidase family protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.16923.1.A1_s_at	At5g52270	-	-	5e-5	At2g46505	SDH4	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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