Co-expression analysis

Gene ID Zm.17630.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g06760: histone H1, putative (HF=4e-1)
Module size 6 genes
NF 0.52
%ile 68.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98Zm.17630.1.A1_atCK348094--4e-1At1g06760histone H1, putativeO.I.H.G.S.X.
0.6785.80.98Zm.4160.1.A1_atCF243936indole-3-acetate beta-glucosyltransferase-1e-2At4g15550IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)O.I.H.G.S.X.
0.6077.80.97Zm.17629.1.A1_atCD435755--2e-6At5g64550loricrin-relatedO.I.H.G.S.X.
0.4048.50.98Zm.3885.1.S1_atCK145224Pectin methylesterase1-6e-2At3g06830pectinesterase family proteinO.I.H.G.S.X.
0.3336.00.98Zm.11837.1.A1_atBM381140hypothetical protein LOC100275424-1e+0At4g16380metal ion bindingO.I.H.G.S.X.
0.2115.50.98Zm.8378.1.A1_atBM073885hypothetical protein LOC100273227-6e+0At3g26860-O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.97Zm.9561.1.A1_atAW433482calmodulin binding protein-7e-7At5g57580calmodulin-binding proteinO.I.H.G.S.X.
0.6077.80.97Zm.7777.1.A1_atBM079863F-box domain containing protein-5e+0At5g60964-O.I.H.G.S.X.
0.5369.10.96Zm.16824.3.S1_atCF634707SAM domain family protein-3e-1At3g07170sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.5369.10.97Zm.2563.1.A1_atBE638571--7e-3At4g22440unknown proteinO.I.H.G.S.X.
0.5065.70.97Zm.6790.1.A1_atAI396367shugoshin-1-3e+0At2g05335SCRL15 (SCR-Like 15)O.I.H.G.S.X.
0.5065.70.97Zm.10100.1.A1_atBM382599hypothetical protein LOC100277526-5e-6At1g50900-O.I.H.G.S.X.
0.4759.90.96Zm.16350.1.S1_atCF349260hypothetical protein LOC100273959-6e-31At2g20930-O.I.H.G.S.X.
0.4455.70.97Zm.13565.1.A1_a_atAY107994.1PIT1-1e-1At5g44610MAP18 (Microtubule-associated Protein 18)O.I.H.G.S.X.
0.4352.80.97Zm.9097.1.A1_atBM266610--1e+0At2g17640ATSERAT3O.I.H.G.S.X.
0.4352.80.97Zm.4530.1.A1_atCK827450hypothetical protein LOC100276667-1e-1At5g33898unknown proteinO.I.H.G.S.X.
0.3844.20.97Zm.6207.5.S1_atCA39957260S ribosomal protein L15-1e-44At4g1739060S ribosomal protein L15 (RPL15B)O.I.H.G.S.X.
0.3641.30.97Zm.5185.1.A1_atAI711952hypothetical protein LOC100280305-1e-36At3g11945homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferaseO.I.H.G.S.X.
0.3437.20.93Zm.17652.1.S1_s_atCK347269plant-specific domain TIGR01615 family protein-3e+0At5g59570myb family transcription factorO.I.H.G.S.X.
0.3336.00.97ZmAffx.523.1.A1_atAI711675--3e+0At3g54363unknown proteinO.I.H.G.S.X.
0.3233.40.94Zm.5838.1.A1_atCF638063tubulin-specific chaperone A-4e-13At2g30410KIS (KIESEL)O.I.H.G.S.X.
0.3233.40.94Zm.9587.1.A1_atBM339308--5e+0At5g54062unknown proteinO.I.H.G.S.X.
0.3131.60.96Zm.18639.1.A1_atCF631246hypothetical protein LOC100193415-2e-1At3g16490IQD26 (IQ-domain 26)O.I.H.G.S.X.
0.3131.60.96Zm.12248.2.S1_atCO525571hypothetical protein LOC100216999-1e+1At5g44568unknown proteinO.I.H.G.S.X.
0.3029.80.97Zm.561.1.A1_atAF244701.1glutathione transferase23-5e-1At3g43800ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)O.I.H.G.S.X.
0.3029.80.97Zm.13681.1.S1_atAY106895.1hypothetical protein LOC100191679-4e-10At1g12370PHR1 (PHOTOLYASE 1)O.I.H.G.S.X.
0.3029.80.96Zm.13198.2.A1_atCA400950--4e+0At3g43432unknown proteinO.I.H.G.S.X.
0.2928.10.96ZmAffx.811.1.S1_atAI770397--3e+0At2g31305INH3 (INHIBITOR-3)O.I.H.G.S.X.
0.2928.10.95Zm.1353.1.A1_atAW862733PCO069699 protein-2e+0At5g13900protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.2928.10.96Zm.13793.1.A1_atBE123455hypothetical protein LOC100274684-6e-1At1g10220-O.I.H.G.S.X.
0.2928.10.96Zm.4384.1.A1_atCF637440--7e-1At2g30560glycine-rich proteinO.I.H.G.S.X.
0.2928.10.96Zm.2667.1.A1_atAW066795signal transducer-3e-2At3g44750HDA3 (HISTONE DEACETYLASE 3)O.I.H.G.S.X.
0.2724.60.97Zm.3286.1.A1_atBG265986--2e+0At4g32551LUG (LEUNIG)O.I.H.G.S.X.
0.2724.60.95Zm.5748.1.A1_atAI649420hypothetical protein LOC100278320-8e-8At5g16960NADP-dependent oxidoreductase, putativeO.I.H.G.S.X.
0.2724.60.96Zm.8122.1.A1_atBM736458hypothetical protein LOC100274535-4e-73At2g44610RAB6AO.I.H.G.S.X.
0.2724.60.97Zm.5837.1.S1_atAI649832photosystem II reaction center W protein-6e+0At5g66710protein kinase, putativeO.I.H.G.S.X.
0.2724.60.98Zm.6045.2.A1_a_atBM337093guanine nucleotide-binding protein beta subunit-like protein-2e-10At1g18080ATARCAO.I.H.G.S.X.
0.2521.30.94ZmAffx.815.1.S1_atAI770430hypothetical protein LOC100191164-3e+0At4g27320universal stress protein (USP) family proteinO.I.H.G.S.X.
0.2521.30.95Zm.13034.1.S1_atAY106028.1--8e-7At2g12400unknown proteinO.I.H.G.S.X.
0.2521.30.95Zm.2273.1.S1_atAW330980hypothetical protein LOC100272874-7e-1At5g61230ankyrin repeat family proteinO.I.H.G.S.X.
0.2521.30.95Zm.10264.1.S1_atBU049716--9e-1At3g22530unknown proteinO.I.H.G.S.X.
0.2521.30.96Zm.15684.1.S1_atCD441261hypothetical protein LOC100280328-5e-27At1g65410ATNAP11 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 11)O.I.H.G.S.X.
0.2521.30.96Zm.19107.1.A1_atBM332383hypothetical protein LOC100272386-8e-4At1g15030-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.498.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM206325Upper pulvinus 5 min polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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