Co-expression analysis

Gene ID	Zm.17630.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g06760: histone H1, putative (HF=4e-1)
Module size	6 genes
NF	0.52
%ile	68.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.17630.1.A1_at	CK348094	-	-	4e-1	At1g06760	histone H1, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.4160.1.A1_at	CF243936	indole-3-acetate beta-glucosyltransferase	-	1e-2	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.17629.1.A1_at	CD435755	-	-	2e-6	At5g64550	loricrin-related	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.3885.1.S1_at	CK145224	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.11837.1.A1_at	BM381140	hypothetical protein LOC100275424	-	1e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.98	Zm.8378.1.A1_at	BM073885	hypothetical protein LOC100273227	-	6e+0	At3g26860	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the grape gene, 1612462_at, orthologous to the query gene, Zm.17630.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	88.3	1612462_at	At1g06760	hypothetical protein LOC100252558	-	3e-4	At2g14900	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please select
0.92	99.0	1613802_at	At1g06760	hypothetical protein LOC100245819	-	4e+0	At4g01650	-	O.I.	H.G.	S.X.	Please select
0.92	99.0	1619192_at	At1g06760	hypothetical protein LOC100261238	-	2e-1	At3g57380	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.92	99.0	1618535_at	At1g06760	hypothetical protein LOC100252930	-	4e+0	At5g62623	-	O.I.	H.G.	S.X.	Please select
0.92	99.0	1615649_at	At1g06760	hypothetical protein LOC100257872	-	4e+0	At3g22620	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.89	95.5	1609267_at	At1g06760	hypothetical protein LOC100243236	-	4e-16	At5g58860	CYP86A1 (CYTOCHROME P450 86 A1)	O.I.	H.G.	S.X.	Please select
0.88	95.4	1615801_at	At1g06760	-	-	4e-1	At1g65060	4CL3	O.I.	H.G.	S.X.	Please select
0.87	95.2	1616775_at	At1g06760	hypothetical protein LOC100248401	-	2e-9	At1g74460	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.83	94.6	1611724_at	At1g06760	hypothetical protein LOC100242039	-	1e+0	At1g48460	unknown protein	O.I.	H.G.	S.X.	Please select
0.79	92.7	1621885_at	At1g06760	-	-	4e-16	At5g58860	CYP86A1 (CYTOCHROME P450 86 A1)	O.I.	H.G.	S.X.	Please select
0.70	88.6	1607939_at	At1g06760	hypothetical protein LOC100243978	-	7e-12	At4g34050	caffeoyl-CoA 3-O-methyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.58	79.8	1621511_at	At1g06760	hypothetical protein LOC100263809	-	2e+0	At2g17710	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	73.9	1612157_at	At1g06760	hypothetical protein LOC100262045	-	1e-9	At5g05390	LAC12 (laccase 12)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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