Co-expression analysis

Gene ID	Zm.17630.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g06760: histone H1, putative (HF=4e-1)
Module size	6 genes
NF	0.52
%ile	68.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.17630.1.A1_at	CK348094	-	-	4e-1	At1g06760	histone H1, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.4160.1.A1_at	CF243936	indole-3-acetate beta-glucosyltransferase	-	1e-2	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.17629.1.A1_at	CD435755	-	-	2e-6	At5g64550	loricrin-related	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.3885.1.S1_at	CK145224	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.11837.1.A1_at	BM381140	hypothetical protein LOC100275424	-	1e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.98	Zm.8378.1.A1_at	BM073885	hypothetical protein LOC100273227	-	6e+0	At3g26860	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.30642.1.S1_at, orthologous to the query gene, Zm.17630.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.3	TaAffx.30642.1.S1_at	At1g06760	-	-	4e-3	At5g47640	NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)	O.I.	H.G.	S.X.	Please select
0.38	54.7	TaAffx.54764.1.S1_at	At1g06760	-	-	2e+1	At5g37250	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	RPTR-Ta-L36849-1_at	At1g06760	-	-				O.I.	H.G.	S.X.	Please select
0.31	42.7	TaAffx.58749.1.S1_at	At1g06760	-	-	3e+0	At3g29170	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.17755.1.S1_at	At1g06760	-	-	4e+0	At3g23170	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.64110.1.S1_at	At1g06760	-	-	4e+0	At5g45590	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	TaAffx.92296.1.S1_at	At1g06760	-	-	2e+0	At5g07572	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.77845.1.S1_at	At1g06760	-	-	3e-1	At5g67500	VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2)	O.I.	H.G.	S.X.	Please select
0.19	22.4	TaAffx.6782.1.S1_at	At1g06760	-	-	1e+0	At2g32835	RALFL16 (RALF-LIKE 16)	O.I.	H.G.	S.X.	Please select
0.19	22.4	TaAffx.14645.2.S1_at	At1g06760	-	-	9e-1	At3g32100	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	15.8	TaAffx.26433.1.S1_at	At1g06760	-	-	3e+0	At5g62280	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	13.3	TaAffx.58364.1.S1_at	At1g06760	-	-	2e+1	At4g10610	CID12	O.I.	H.G.	S.X.	Please select
0.11	12.4	TaAffx.43242.1.S1_at	At1g06760	-	-	1e+1	At2g38810	HTA8 (HISTONE H2A 8)	O.I.	H.G.	S.X.	Please select
0.10	11.3	TaAffx.107550.1.S1_at	At1g06760	-	-	1e+0	At4g22235	-	O.I.	H.G.	S.X.	Please select
0.06	7.6	TaAffx.112817.1.S1_at	At1g06760	-	-	1e+0	At5g59480	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	TaAffx.5517.1.S1_at	At1g06760	-	-	2e+1	At5g65210	TGA1	O.I.	H.G.	S.X.	Please select
0.04	5.8	TaAffx.24194.1.S1_at	At1g06760	-	-	1e+1	At4g13955	-	O.I.	H.G.	S.X.	Please select
0.03	4.7	TaAffx.130064.2.S1_at	At1g06760	-	-	4e+0	At1g76430	phosphate transporter family protein	O.I.	H.G.	S.X.	Please select
0.02	3.6	TaAffx.69207.2.S1_at	At1g06760	-	-	1e+0	At1g20350	ATTIM17-1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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