Co-expression analysis

Gene ID	Zm.17630.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g06760: histone H1, putative (HF=4e-1)
Module size	6 genes
NF	0.52
%ile	68.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.17630.1.A1_at	CK348094	-	-	4e-1	At1g06760	histone H1, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.4160.1.A1_at	CF243936	indole-3-acetate beta-glucosyltransferase	-	1e-2	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.17629.1.A1_at	CD435755	-	-	2e-6	At5g64550	loricrin-related	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.3885.1.S1_at	CK145224	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.11837.1.A1_at	BM381140	hypothetical protein LOC100275424	-	1e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.98	Zm.8378.1.A1_at	BM073885	hypothetical protein LOC100273227	-	6e+0	At3g26860	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.52205.1.A1_at, orthologous to the query gene, Zm.17630.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	82.2	PtpAffx.52205.1.A1_at	At1g06760	hypothetical protein	-	1e+0	At3g43432	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	PtpAffx.217881.1.S1_at	At1g06760	hypothetical protein	-	1e+0	At4g10420	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.28224.4.A1_at	At1g06760	-	-	4e-1	At1g07745	RAD51D (ARABIDOPSIS HOMOLOG OF RAD51 D)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.217331.1.S1_at	At1g06760	hypothetical protein	-	1e+0	At1g05290	transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.95569.1.A1_at	At1g06760	-	-	1e-3	At5g64880	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.218586.1.S1_at	At1g06760	hypothetical protein	-	1e+1	At4g00650	FRI (FRIGIDA)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.12	19.6	PtpAffx.204010.1.S1_at	At1g06760	NAC domain protein, IPR003441	-	3e-6	At5g17260	anac086 (Arabidopsis NAC domain containing protein 86)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.10	16.3	PtpAffx.142816.1.S1_at	At1g06760	-	-	1e-1	At4g39360	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.209502.1.S1_at	At1g06760	hypothetical protein	-	4e-1	At3g62250	UBQ5 (ubiquitin 5)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.08	12.9	PtpAffx.26302.1.A1_at	At1g06760	-	-	3e-14	At1g55760	BTB/POZ domain-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.90518.1.S1_at	At1g06760	-	-	4e+0	At3g23850	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.07	11.6	PtpAffx.21447.2.A1_a_at	At1g06760	hypothetical protein	-	4e-1	At3g46540	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.206335.1.S1_at	At1g06760	hypothetical protein	-	1e-21	At5g01710	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.14238.5.A1_a_at	At1g06760	-	-	1e-3	At4g00860	ATOZI1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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