Co-expression analysis

Gene ID	Zm.17630.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g06760: histone H1, putative (HF=4e-1)
Module size	6 genes
NF	0.52
%ile	68.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.17630.1.A1_at	CK348094	-	-	4e-1	At1g06760	histone H1, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.4160.1.A1_at	CF243936	indole-3-acetate beta-glucosyltransferase	-	1e-2	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.17629.1.A1_at	CD435755	-	-	2e-6	At5g64550	loricrin-related	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.3885.1.S1_at	CK145224	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.11837.1.A1_at	BM381140	hypothetical protein LOC100275424	-	1e+0	At4g16380	metal ion binding	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.98	Zm.8378.1.A1_at	BM073885	hypothetical protein LOC100273227	-	6e+0	At3g26860	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.4	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the barley gene, Contig12203_at, orthologous to the query gene, Zm.17630.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	Contig12203_at	At1g06760	-	-	2e+0	At5g09530	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig14394_at	At1g06760	-	-	4e-1	At2g20625	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig7648_at	At1g06760	-	-	6e-1	At1g12250	thylakoid lumenal protein-related	O.I.	H.G.	S.X.	Please select
0.36	47.1	HD05C22r_at	At1g06760	-	-	1e+0	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig11156_at	At1g06760	-	-	2e-10	At2g43070	protease-associated (PA) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig1549_s_at	At1g06760	-	-	2e-29	At3g10950	60S ribosomal protein L37a (RPL37aB)	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig149_at	At1g06760	glyceraldehyde 3-phosphate dehydrogenase	-	3e-148	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig16505_at	At1g06760	-	-	8e-7	At2g19430	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig8176_at	At1g06760	-	-	8e-32	At1g05350	thiF family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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