CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.17628.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g34560: katanin, putative (HF=6e-17)

Module size 7 genes

NF 0.61

%ile 81.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.92 99.2 0.97 Zm.17628.1.S1_at CN845468 - - 6e-17 At2g34560 katanin, putative O.I. H.G. S.X.
0.67 85.8 0.97 Zm.6962.1.S1_at CA404020 sorbitol dehydrogenase - 2e-1 At5g51970 sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative O.I. H.G. S.X.
0.67 85.8 0.97 Zm.17366.1.S1_s_at CK371241 - - 1e+1 At5g20060 phospholipase/carboxylesterase family protein O.I. H.G. S.X.
0.67 85.8 0.97 Zm.8865.1.A1_at BM267927 hypothetical protein LOC100191271 - 3e-9 At5g35460 unknown protein O.I. H.G. S.X.
0.57 75.1 0.97 Zm.15542.1.S1_at CD219383 - - 2e-2 At4g29080 PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2) O.I. H.G. S.X.
0.53 69.1 0.97 Zm.38.1.S1_at M60215.1 ser/thr protein phosphatase1 - 1e-12 At2g29400 TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) O.I. H.G. S.X.
0.32 33.4 0.97 Zm.6863.2.A1_at CF637783 hypothetical protein LOC100193970 - 7e-67 At1g48410 AGO1 (ARGONAUTE 1) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.92	99.2	0.97	Zm.17628.1.S1_at	CN845468	-	-	6e-17	At2g34560	katanin, putative	O.I.	H.G.	S.X.
0.67	85.8	0.97	Zm.6962.1.S1_at	CA404020	sorbitol dehydrogenase	-	2e-1	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	O.I.	H.G.	S.X.
0.67	85.8	0.97	Zm.17366.1.S1_s_at	CK371241	-	-	1e+1	At5g20060	phospholipase/carboxylesterase family protein	O.I.	H.G.	S.X.
0.67	85.8	0.97	Zm.8865.1.A1_at	BM267927	hypothetical protein LOC100191271	-	3e-9	At5g35460	unknown protein	O.I.	H.G.	S.X.
0.57	75.1	0.97	Zm.15542.1.S1_at	CD219383	-	-	2e-2	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	O.I.	H.G.	S.X.
0.53	69.1	0.97	Zm.38.1.S1_at	M60215.1	ser/thr protein phosphatase1	-	1e-12	At2g29400	TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)	O.I.	H.G.	S.X.
0.32	33.4	0.97	Zm.6863.2.A1_at	CF637783	hypothetical protein LOC100193970	-	7e-67	At1g48410	AGO1 (ARGONAUTE 1)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.9 98.3 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8 98.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7 98.1 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6 98.1 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5 98.1 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9 97.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7 97.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2 97.8 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7 97.2 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8 95.5 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
9.9	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the barley gene, HU05K13u_at, orthologous to the query gene, Zm.17628.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.93 98.7 HU05K13u_at At2g34560 - - 3e-1 At2g34560 katanin, putative O.I. H.G. S.X.
0.44 58.9 Contig16932_at At2g34560 - - 6e-1 At3g17030 - O.I. H.G. S.X.
0.40 53.1 Contig1353_s_at At2g34560 - - 1e-1 At4g11300 unknown protein O.I. H.G. S.X.
0.39 50.5 Contig15154_at At2g34560 - - 6e-3 At2g42700 - O.I. H.G. S.X.
0.38 49.5 Contig8323_at At2g34560 - - 3e+0 Atmg00890 - O.I. H.G. S.X.
0.35 45.1 Contig5213_at At2g34560 - - 2e-11 At5g61020 ECT3 O.I. H.G. S.X.
0.33 42.6 Contig10896_at At2g34560 - - 5e-41 At3g03120 ATARFB1C (ADP-ribosylation factor B1C) O.I. H.G. S.X.
0.33 42.6 Contig8442_at At2g34560 - - 5e-24 At1g34470 permease-related O.I. H.G. S.X.
0.32 40.3 Contig21040_at At2g34560 - - 2e+0 At5g12390 FIS1B (FISSION 1B) O.I. H.G. S.X.
0.32 40.3 Contig2670_x_at At2g34560 - - 5e-20 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) O.I. H.G. S.X.
0.32 40.3 Contig9980_at At2g34560 - - 2e+0 At1g75190 unknown protein O.I. H.G. S.X.
0.31 38.6 HZ59C04r_s_at At2g34560 - - 2e+0 At3g15111 unknown protein O.I. H.G. S.X.
0.29 35.5 Contig7306_at At2g34560 - - 1e+0 At3g17820 ATGSKB6 O.I. H.G. S.X.
0.29 35.5 Contig8854_at At2g34560 - - 1e-5 At3g02110 scpl25 (serine carboxypeptidase-like 25) O.I. H.G. S.X.
0.29 35.5 HT08E07u_x_at At2g34560 - - 1e+0 At1g25054 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase O.I. H.G. S.X.
0.28 35.5 Contig4873_s_at At2g34560 - - 4e+0 At5g17847 unknown protein O.I. H.G. S.X.
0.27 32.1 Contig1641_at At2g34560 - - 1e-5 At5g20340 BG5 (beta-1,3-glucanase 5) O.I. H.G. S.X.
0.26 30.4 Contig25417_at At2g34560 - - 1e+0 At2g29340 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.26 30.4 Contig9787_at At2g34560 - - 4e+0 At2g27505 - O.I. H.G. S.X.
0.25 28.9 Contig11539_at At2g34560 - - 1e+0 At3g02590 delta 7-sterol-C5-desaturase, putative O.I. H.G. S.X.
0.24 27.2 Contig23628_at At2g34560 - - 4e-8 At4g31040 proton extrusion protein-related O.I. H.G. S.X.
0.24 27.2 Contig4760_s_at At2g34560 - - 1e+0 At4g38700 disease resistance-responsive family protein O.I. H.G. S.X.
0.23 26.1 Contig7345_at At2g34560 - - 3e-1 At4g36750 quinone reductase family protein O.I. H.G. S.X.
0.23 26.1 Contig3294_s_at At2g34560 - - 5e-4 At5g02780 In2-1 protein, putative O.I. H.G. S.X.
0.22 24.2 Contig8857_at At2g34560 - - 4e-1 At2g37600 60S ribosomal protein L36 (RPL36A) O.I. H.G. S.X.
0.22 24.2 HVSMEi0006J13r2_at At2g34560 - - 3e+0 At5g09370 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.22 24.2 Contig2811_at At2g34560 - - 3e-1 At1g21550 calcium-binding protein, putative O.I. H.G. S.X.
0.22 24.2 Contig6995_at At2g34560 - - 2e-8 At5g57270 unknown protein O.I. H.G. S.X.
0.20 21.1 Contig9915_at At2g34560 - - 1e-8 At5g16750 TOZ (TORMOZEMBRYO DEFECTIVE) O.I. H.G. S.X.
0.20 21.1 Contig6581_at At2g34560 - - 6e-2 At3g26330 CYP71B37 O.I. H.G. S.X.
0.20 21.1 Contig10657_at At2g34560 - - 2e+0 At4g33310 unknown protein O.I. H.G. S.X.
0.19 19.6 Contig7882_at At2g34560 - - 7e-16 At5g54290 cytochrome c biogenesis protein family O.I. H.G. S.X.
0.19 19.6 Contig9875_at At2g34560 - - 9e-3 At3g29100 VTI13 O.I. H.G. S.X.
0.18 18.2 Contig5724_at At2g34560 - - 4e-12 At1g06570 PDS1 (PHYTOENE DESATURATION 1) O.I. H.G. S.X.
0.17 16.9 Contig2670_s_at At2g34560 - - 5e-20 At4g25820 XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9) O.I. H.G. S.X.
0.17 16.9 HA11D16u_s_at At2g34560 - - 2e+0 At1g08520 CHLD O.I. H.G. S.X.
0.16 15.3 Contig504_x_at At2g34560 - - 3e-1 At5g38200 hydrolase O.I. H.G. S.X.
0.13 11.6 HX03D08u_s_at At2g34560 - - 6e-1 At1g04960 - O.I. H.G. S.X.
0.12 10.4 Contig4563_at At2g34560 - - 5e-15 At3g17240 mtLPD2 (LIPOAMIDE DEHYDROGENASE 2) O.I. H.G. S.X.
0.12 10.4 Contig12252_at At2g34560 - - 6e-1 At3g46770 transcriptional factor B3 family protein O.I. H.G. S.X.
0.08 6.5 Contig12827_at At2g34560 - - 8e-1 At2g27470 NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.93	98.7	HU05K13u_at	At2g34560	-	-	3e-1	At2g34560	katanin, putative	O.I.	H.G.	S.X.
0.44	58.9	Contig16932_at	At2g34560	-	-	6e-1	At3g17030	-	O.I.	H.G.	S.X.
0.40	53.1	Contig1353_s_at	At2g34560	-	-	1e-1	At4g11300	unknown protein	O.I.	H.G.	S.X.
0.39	50.5	Contig15154_at	At2g34560	-	-	6e-3	At2g42700	-	O.I.	H.G.	S.X.
0.38	49.5	Contig8323_at	At2g34560	-	-	3e+0	Atmg00890	-	O.I.	H.G.	S.X.
0.35	45.1	Contig5213_at	At2g34560	-	-	2e-11	At5g61020	ECT3	O.I.	H.G.	S.X.
0.33	42.6	Contig10896_at	At2g34560	-	-	5e-41	At3g03120	ATARFB1C (ADP-ribosylation factor B1C)	O.I.	H.G.	S.X.
0.33	42.6	Contig8442_at	At2g34560	-	-	5e-24	At1g34470	permease-related	O.I.	H.G.	S.X.
0.32	40.3	Contig21040_at	At2g34560	-	-	2e+0	At5g12390	FIS1B (FISSION 1B)	O.I.	H.G.	S.X.
0.32	40.3	Contig2670_x_at	At2g34560	-	-	5e-20	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	O.I.	H.G.	S.X.
0.32	40.3	Contig9980_at	At2g34560	-	-	2e+0	At1g75190	unknown protein	O.I.	H.G.	S.X.
0.31	38.6	HZ59C04r_s_at	At2g34560	-	-	2e+0	At3g15111	unknown protein	O.I.	H.G.	S.X.
0.29	35.5	Contig7306_at	At2g34560	-	-	1e+0	At3g17820	ATGSKB6	O.I.	H.G.	S.X.
0.29	35.5	Contig8854_at	At2g34560	-	-	1e-5	At3g02110	scpl25 (serine carboxypeptidase-like 25)	O.I.	H.G.	S.X.
0.29	35.5	HT08E07u_x_at	At2g34560	-	-	1e+0	At1g25054	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase	O.I.	H.G.	S.X.
0.28	35.5	Contig4873_s_at	At2g34560	-	-	4e+0	At5g17847	unknown protein	O.I.	H.G.	S.X.
0.27	32.1	Contig1641_at	At2g34560	-	-	1e-5	At5g20340	BG5 (beta-1,3-glucanase 5)	O.I.	H.G.	S.X.
0.26	30.4	Contig25417_at	At2g34560	-	-	1e+0	At2g29340	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.26	30.4	Contig9787_at	At2g34560	-	-	4e+0	At2g27505	-	O.I.	H.G.	S.X.
0.25	28.9	Contig11539_at	At2g34560	-	-	1e+0	At3g02590	delta 7-sterol-C5-desaturase, putative	O.I.	H.G.	S.X.
0.24	27.2	Contig23628_at	At2g34560	-	-	4e-8	At4g31040	proton extrusion protein-related	O.I.	H.G.	S.X.
0.24	27.2	Contig4760_s_at	At2g34560	-	-	1e+0	At4g38700	disease resistance-responsive family protein	O.I.	H.G.	S.X.
0.23	26.1	Contig7345_at	At2g34560	-	-	3e-1	At4g36750	quinone reductase family protein	O.I.	H.G.	S.X.
0.23	26.1	Contig3294_s_at	At2g34560	-	-	5e-4	At5g02780	In2-1 protein, putative	O.I.	H.G.	S.X.
0.22	24.2	Contig8857_at	At2g34560	-	-	4e-1	At2g37600	60S ribosomal protein L36 (RPL36A)	O.I.	H.G.	S.X.
0.22	24.2	HVSMEi0006J13r2_at	At2g34560	-	-	3e+0	At5g09370	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.22	24.2	Contig2811_at	At2g34560	-	-	3e-1	At1g21550	calcium-binding protein, putative	O.I.	H.G.	S.X.
0.22	24.2	Contig6995_at	At2g34560	-	-	2e-8	At5g57270	unknown protein	O.I.	H.G.	S.X.
0.20	21.1	Contig9915_at	At2g34560	-	-	1e-8	At5g16750	TOZ (TORMOZEMBRYO DEFECTIVE)	O.I.	H.G.	S.X.
0.20	21.1	Contig6581_at	At2g34560	-	-	6e-2	At3g26330	CYP71B37	O.I.	H.G.	S.X.
0.20	21.1	Contig10657_at	At2g34560	-	-	2e+0	At4g33310	unknown protein	O.I.	H.G.	S.X.
0.19	19.6	Contig7882_at	At2g34560	-	-	7e-16	At5g54290	cytochrome c biogenesis protein family	O.I.	H.G.	S.X.
0.19	19.6	Contig9875_at	At2g34560	-	-	9e-3	At3g29100	VTI13	O.I.	H.G.	S.X.
0.18	18.2	Contig5724_at	At2g34560	-	-	4e-12	At1g06570	PDS1 (PHYTOENE DESATURATION 1)	O.I.	H.G.	S.X.
0.17	16.9	Contig2670_s_at	At2g34560	-	-	5e-20	At4g25820	XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)	O.I.	H.G.	S.X.
0.17	16.9	HA11D16u_s_at	At2g34560	-	-	2e+0	At1g08520	CHLD	O.I.	H.G.	S.X.
0.16	15.3	Contig504_x_at	At2g34560	-	-	3e-1	At5g38200	hydrolase	O.I.	H.G.	S.X.
0.13	11.6	HX03D08u_s_at	At2g34560	-	-	6e-1	At1g04960	-	O.I.	H.G.	S.X.
0.12	10.4	Contig4563_at	At2g34560	-	-	5e-15	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	O.I.	H.G.	S.X.
0.12	10.4	Contig12252_at	At2g34560	-	-	6e-1	At3g46770	transcriptional factor B3 family protein	O.I.	H.G.	S.X.
0.08	6.5	Contig12827_at	At2g34560	-	-	8e-1	At2g27470	NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

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Gene ID	Zm.17628.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g34560: katanin, putative (HF=6e-17)
Module size	7 genes
NF	0.61
%ile	81.3

Co-expression analysis

Gene ID Zm.17628.1.S1_at Gene name Homology with ArabidopsisSimilar to At2g34560: katanin, putative (HF=6e-17) Module size 7 genes NF 0.61 %ile 81.3

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxOryza_sativaPopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.17628.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g34560: katanin, putative (HF=6e-17)

Module size 7 genes

NF 0.61

%ile 81.3

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera