CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.17628.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g34560: katanin, putative (HF=6e-17)

Module size 7 genes

NF 0.61

%ile 81.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.92 99.2 0.97 Zm.17628.1.S1_at CN845468 - - 6e-17 At2g34560 katanin, putative O.I. H.G. S.X.
0.67 85.8 0.97 Zm.6962.1.S1_at CA404020 sorbitol dehydrogenase - 2e-1 At5g51970 sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative O.I. H.G. S.X.
0.67 85.8 0.97 Zm.17366.1.S1_s_at CK371241 - - 1e+1 At5g20060 phospholipase/carboxylesterase family protein O.I. H.G. S.X.
0.67 85.8 0.97 Zm.8865.1.A1_at BM267927 hypothetical protein LOC100191271 - 3e-9 At5g35460 unknown protein O.I. H.G. S.X.
0.57 75.1 0.97 Zm.15542.1.S1_at CD219383 - - 2e-2 At4g29080 PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2) O.I. H.G. S.X.
0.53 69.1 0.97 Zm.38.1.S1_at M60215.1 ser/thr protein phosphatase1 - 1e-12 At2g29400 TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) O.I. H.G. S.X.
0.32 33.4 0.97 Zm.6863.2.A1_at CF637783 hypothetical protein LOC100193970 - 7e-67 At1g48410 AGO1 (ARGONAUTE 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.9 98.3 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8 98.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7 98.1 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6 98.1 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5 98.1 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9 97.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7 97.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2 97.8 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7 97.2 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8 95.5 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At2g34560, orthologous to the query gene, Zm.17628.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.40 50.8 At2g34560 818020 katanin, putative F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:protein metabolic process;C:unknown;OBMFPAV O.I. H.G. S.X.
0.89 94.6 At5g47770 834828 FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1) Encodes a protein with farnesyl diphosphate synthase activity. O.I. H.G. S.X.
0.67 81.6 At2g38700 818452 MVD1 (MEVALONATE DIPHOSPHATE DECARBOXYLASE 1) Encodes mevalonate diphosphate decarboxylase, the enzyme that catalyzes the synthesis of isopentenyl diphosphate, used in sterol and isoprenoid biosynthesis. The protein appears to form a homodimeric complex. Incidentally, it was shown that the Arabidopsis MVD protein could also interact with its yeast homolog to form a heterodimer. O.I. H.G. S.X.
0.67 81.6 At5g48230 834876 ACAT2 (ACETOACETYL-COA THIOLASE 2) F:acetyl-CoA C-acetyltransferase activity, catalytic activity;P:embryonic development ending in seed dormancy;C:peroxisome, plasma membrane;BOMFAP O.I. H.G. S.X.
0.13 5.8 At3g09300 820086 ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B) F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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