Co-expression analysis

Gene ID	Zm.17557.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g17080: cathepsin-related (HF=1e+0)
Module size	8 genes
NF	0.27
%ile	23.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	71.6	0.93	Zm.17557.1.A1_at	CK370056	-	-	1e+0	At5g17080	cathepsin-related	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.94	Zm.19081.1.S1_at	CO524309	-	-	3e-2	At5g06990	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.94	Zm.17327.2.S1_at	CF628822	-	-	1e+0	At3g04640	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.95	Zm.435.1.S1_at	AF069910.1	pyruvate dehydrogenase E1 beta subunit isoform 3	-	3e-28	At5g50850	MAB1 (MACCI-BOU)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.95	Zm.1180.1.S1_at	BE512002	PHD finger protein	-	1e-8	At5g26210	AL4 (ALFIN-LIKE 4)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.96	Zm.16759.1.A1_at	BM338376	lactoylglutathione lyase	-	1e-11	At1g08110	lactoylglutathione lyase, putative / glyoxalase I, putative	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.95	Zm.7568.1.A1_at	CF634665	blue copper protein	-	2e+0	At1g22480	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.94	Zm.3591.2.A1_at	AW498095	hypothetical protein LOC100280276	-	5e-2	At3g16500	PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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