Co-expression analysis

Gene ID	Zm.17532.1.A1_at
Gene name	hypothetical protein LOC100279205
Homology with Arabidopsis	Similar to At5g53970: aminotransferase, putative (HF=2e-1)
Module size	21 genes
NF	0.45
%ile	55.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	91.1	0.97	Zm.17532.1.A1_at	CK369868	hypothetical protein LOC100279205	-	2e-1	At5g53970	aminotransferase, putative	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.98	ZmAffx.1016.1.A1_at	AI881482	Hypothetical protein LOC100194117	-	1e-2	At4g19985	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.97	Zm.2668.1.A1_at	CB334210	hypothetical protein LOC100193351	-	4e+0	At1g01050	AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1)	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.98	Zm.13679.1.A1_at	AW424469	chemocyanin	-	9e-5	At1g72230	plastocyanin-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.98	Zm.15421.1.S1_at	AY107122.1	-	-	1e+0	At3g42050	vacuolar ATP synthase subunit H family protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.6532.4.S1_a_at	BM380149	dehydrin 13	-	9e-2	At1g20440	COR47 (COLD-REGULATED 47)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.18385.1.S1_at	CO530624	hypothetical protein LOC100276763	-	1e-1	At3g47810	MAG1 (MAIGO 1)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.98	Zm.14476.2.A1_at	AY109949.1	Protein disulfide isomerase	-	1e-5	At3g54960	ATPDIL1-3 (PDI-LIKE 1-3)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.4367.1.S1_at	AY107325.1	mitochondrial import receptor subunit TOM22	-	1e-4	At5g43970	TOM22-V (TRANSLOCASE OF OUTER MEMBRANE 22-V)	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.98	Zm.4553.1.S1_at	BE238641	-	-	4e-1	At4g28860	ckl4 (Casein Kinase I-like 4)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.98	Zm.17521.1.S1_at	CK370540	complex 1 protein containing protein	-	2e+0	At4g39340	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.98	ZmAffx.1067.1.S1_at	AI901309	-	-	1e+0	At4g05220	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	Zm.5729.1.A1_at	AI637125	peptidoglycan binding domain containing protein	-	3e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.5313.2.A1_at	CA398418	60S ribosomal protein L12	-	9e-9	At2g37190	60S ribosomal protein L12 (RPL12A)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.99	Zm.6973.1.A1_at	AY109828.1	Hypothetical protein LOC100216936	-	5e-1	At4g28830	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.9926.1.A1_at	CA401778	-	-	7e-1	At4g15790	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.98	ZmAffx.996.1.A1_at	AI857152	-	-	3e+0	At5g02230	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.2611.1.A1_a_at	BM348249	hypothetical protein LOC100278318	-	3e-1	At1g49820	ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.98	Zm.13202.1.A1_at	CA403491	hypothetical protein LOC100273129	-	1e-8	At1g56590	clathrin adaptor complexes medium subunit family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	ZmAffx.531.1.A1_at	AI711719	-	-	8e-1	At5g20370	serine-rich protein-related	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.98	Zm.17172.1.A1_at	AI664919	-	-	2e+0	At1g55675	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.4	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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