Co-expression analysis

Gene ID	Zm.17494.1.A1_at
Gene name	hypothetical protein LOC100193709
Homology with Arabidopsis	Similar to At1g68010: HPR (HF=3e-20)
Module size	13 genes
NF	0.46
%ile	55.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	95.9	0.99	Zm.17494.1.A1_at	CK145115	hypothetical protein LOC100193709	-	3e-20	At1g68010	HPR	O.I.	H.G.	S.X.	Please select
0.65	82.1	1.00	Zm.4390.1.A1_at	AI714448	hypothetical protein LOC100191618	-	1e-8	At3g06190	BPM2 (BTB-POZ AND MATH DOMAIN 2)	O.I.	H.G.	S.X.	Please select
0.55	71.6	1.00	Zm.4166.1.A1_at	BG841131	hypothetical protein LOC100191831	-	1e+0	At1g17145	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.53	69.1	1.00	Zm.10079.1.A1_a_at	CK370542	hypothetical protein LOC100193809	-	2e-3	At4g32480	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	ZmAffx.87.1.A1_at	AI665344	-	-	1e+1	At5g39330	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.99	Zm.17816.2.S1_a_at	CK144883	tRNA pseudouridine synthase family protein	-	2e-2	At1g76120	tRNA pseudouridine synthase family protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	1.00	Zm.34.2.S1_at	AY103769.1	-	-	1e-13	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	O.I.	H.G.	S.X.	Please select
0.45	56.4	1.00	Zm.14841.1.A1_at	AI491693	hypothetical protein LOC100191514	-	2e+0	At2g07681	cytochrome c biogenesis protein, putative	O.I.	H.G.	S.X.	Please select
0.44	55.7	1.00	ZmAffx.889.1.S1_at	AI770841	pre-mRNA processing factor	-	8e-7	At2g40650	pre-mRNA splicing factor PRP38 family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	Zm.15810.1.S1_at	BU098966	-	-	4e-3	At3g52660	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.99	Zm.5102.1.S1_at	AI600843	hypothetical protein LOC100273584	-	9e-11	At5g08020	RPA70B (RPA70-KDA SUBUNIT B)	O.I.	H.G.	S.X.	Please select
0.32	33.4	1.00	Zm.4171.1.A1_at	BG841769	isoamyl acetate-hydrolyzing esterase	-	3e+0	At1g69190	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase	O.I.	H.G.	S.X.	Please select
0.28	28.1	1.00	Zm.1368.1.A1_at	CA399867	calcineurin B-like protein 3	-	3e-40	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.8	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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