Co-expression analysis

Gene ID	Zm.17442.1.A1_at
Gene name	hypothetical protein LOC100279110
Homology with Arabidopsis	Similar to At3g54570: calmodulin-binding protein-related (HF=6e+0)
Module size	16 genes
NF	0.31
%ile	28.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.94	Zm.17442.1.A1_at	CK347197	hypothetical protein LOC100279110	-	6e+0	At3g54570	calmodulin-binding protein-related	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.17516.1.S1_at	CF623514	hypothetical protein LOC100216611	-	3e-12	At5g63650	SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.96	ZmAffx.697.1.A1_at	AI737808	-	-	3e+0	At4g27745	-	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.96	Zm.12970.1.A1_at	CO049279	hypothetical protein LOC100193219	-	7e-7	At3g10330	transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.96	Zm.1943.1.A1_at	BM080868	-	-	6e+0	At3g28440	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.95	Zm.3994.1.S1_at	AF370005.1	pyruvate decarboxylase3	-	2e-14	At5g01320	pyruvate decarboxylase, putative	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.2895.10.S1_a_at	AI667767	-	-	7e-30	At4g14320	60S ribosomal protein L36a/L44 (RPL36aB)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.96	Zm.8244.1.S1_at	BM073405	-	-	2e+0	At1g30972	-	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.2614.2.S1_at	CD436098	-	-	2e+0	At5g17930	binding / protein binding	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.7282.1.A1_at	AB016810.1	ferredoxin2	-	3e-2	At1g10960	ATFD1 (FERREDOXIN 1)	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.19044.1.S1_at	CO528761	-	-	3e+0	At5g53592	-	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.19127.1.A1_at	AY110588.1	-	-	2e-3	At4g01660	ATABC1 (ARABIDOPSIS THALIANA ABC TRANSPORTER 1)	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.96	Zm.7463.1.A1_at	BM078503	hypothetical protein LOC100276250	-	2e+0	At1g21090	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.96	Zm.4122.1.S1_at	AY107878.1	-	-	2e+0	At5g07490	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.97	Zm.7858.1.A1_at	AY108500.1	-	-	3e-3	At1g70940	PIN3 (PIN-FORMED 3)	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.98	Zm.4271.4.A1_at	BG316519	hypothetical protein LOC100273684	-	6e-5	At1g02690	IMPA-6 (IMPORTIN ALPHA ISOFORM 6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.3	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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