Co-expression analysis

Gene ID	Zm.17366.1.S1_s_at
Gene name
Homology with Arabidopsis	Similar to At5g20060: phospholipase/carboxylesterase family protein (HF=1e+1)
Module size	7 genes
NF	0.61
%ile	81.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.97	Zm.17366.1.S1_s_at	CK371241	-	-	1e+1	At5g20060	phospholipase/carboxylesterase family protein	O.I.	H.G.	S.X.	Please select
0.92	99.2	0.97	Zm.17628.1.S1_at	CN845468	-	-	6e-17	At2g34560	katanin, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.6962.1.S1_at	CA404020	sorbitol dehydrogenase	-	2e-1	At5g51970	sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.8865.1.A1_at	BM267927	hypothetical protein LOC100191271	-	3e-9	At5g35460	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.15542.1.S1_at	CD219383	-	-	2e-2	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.38.1.S1_at	M60215.1	ser/thr protein phosphatase1	-	1e-12	At2g29400	TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.6863.2.A1_at	CF637783	hypothetical protein LOC100193970	-	7e-67	At1g48410	AGO1 (ARGONAUTE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.5	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the wheat gene, Ta.12048.1.A1_at, orthologous to the query gene, Zm.17366.1.S1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.76	90.1	Ta.12048.1.A1_at	At5g20060	-	-	7e-1	At1g17370	UBP1B (oligouridylate binding protein 1B)	O.I.	H.G.	S.X.	Please select
0.71	88.0	Ta.2881.3.S1_at	At5g20060	-	-	4e+0	At1g65720	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	86.9	Ta.28242.1.S1_x_at	At5g20060	-	-	3e-9	At5g50250	31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative	O.I.	H.G.	S.X.	Please select
0.61	82.0	Ta.28242.1.S1_at	At5g20060	-	-	3e-9	At5g50250	31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative	O.I.	H.G.	S.X.	Please select
0.56	78.6	TaAffx.21361.1.S1_at	At5g20060	-	-	6e-4	At5g44650	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.20785.1.S1_at	At5g20060	-	-	3e-1	At2g47880	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.52	73.7	Ta.28242.2.S1_x_at	At5g20060	-	-	9e-7	At4g24770	RBP31 (31-KDA RNA BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.13527.1.S1_at	At5g20060	-	-	5e-1	At5g11910	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.22791.1.S1_at	At5g20060	-	-	2e-13	At4g21860	MSRB2 (methionine sulfoxide reductase B 2)	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.9520.1.S1_at	At5g20060	Ps16 protein	-	2e-7	At5g50250	31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.18440.1.S1_s_at	At5g20060	-	-	9e-3	At1g45230	defective chloroplasts and leaves protein-related / DCL protein-related	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.23823.1.S1_a_at	At5g20060	-	-	2e-6	At5g11480	GTP binding	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.12375.1.A1_at	At5g20060	-	-	1e-7	At1g32070	ATNSI (NUCLEAR SHUTTLE INTERACTING)	O.I.	H.G.	S.X.	Please select
0.42	60.9	Ta.6724.2.S1_x_at	At5g20060	-	-	2e+1	At5g59850	40S ribosomal protein S15A (RPS15aF)	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.4922.1.S1_at	At5g20060	-	-	1e-1	At3g61080	fructosamine kinase family protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.22426.1.S1_at	At5g20060	-	-	3e+0	At3g52520	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.23823.1.S1_at	At5g20060	-	-	2e-6	At5g11480	GTP binding	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.20947.1.S1_a_at	At5g20060	-	-	2e-6	At3g54210	ribosomal protein L17 family protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	Ta.25453.1.S1_a_at	At5g20060	-	-	2e+0	At5g53720	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.25287.1.A1_at	At5g20060	-	-	1e+0	At4g22750	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.23114.1.S1_at	At5g20060	-	-	2e-13	At2g39140	SVR1 (SUPPRESSOR OF VARIEGATION 1)	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.763.3.A1_x_at	At5g20060	-	-	2e-6	At3g63490	ribosomal protein L1 family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.30586.1.S1_s_at	At5g20060	-	-	3e-12	At1g18440	peptidyl-tRNA hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.13241.1.S1_at	At5g20060	-	-	1e-1	At1g49970	CLPR1	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.4453.1.S1_at	At5g20060	-	-	3e-2	At3g29020	MYB110 (myb domain protein 110)	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.21562.1.S1_at	At5g20060	-	-	2e+1	At4g30380	EXLB2 (EXPANSIN-LIKE B2 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.1979.1.S1_a_at	At5g20060	-	-	2e-1	At4g24770	RBP31 (31-KDA RNA BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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