Co-expression analysis

Gene ID	Zm.17357.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g29195: unknown protein (HF=5e+0)
Module size	6 genes
NF	0.15
%ile	9.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.9	0.94	Zm.17357.1.S1_at	CK370769	-	-	5e+0	At1g29195	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.94	Zm.376.1.A1_at	BM074849	Hypoxically induced transcript 2	-	2e-3	At1g05000	tyrosine specific protein phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	ZmAffx.566.1.S1_at	AI714636	-	-	2e-1	At5g05610	AL1 (ALFIN-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.94	Zm.5732.1.A1_at	AY108368.1	hypothetical protein LOC100272253	-	1e+0	At1g05780	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.94	Zm.4705.1.A1_at	BG840802	-	-	2e-6	At1g14980	CPN10 (CHAPERONIN 10)	O.I.	H.G.	S.X.	Please select
0.03	1.1	0.93	ZmAffx.238.1.A1_at	AI670250	-	-	1e+1	At3g62140	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.1	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig590_s_at, orthologous to the query gene, Zm.17357.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	53.1	Contig590_s_at	At1g29195	hypothetical LOC548259	-	1e+0	At4g09840	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	80.3	Contig20244_at	At1g29195	-	-	2e-4	At4g37200	HCF164	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig7157_at	At1g29195	-	-	2e-11	At2g24500	FZF	O.I.	H.G.	S.X.	Please select
0.42	55.2	Contig16651_at	At1g29195	-	-	3e+0	At5g01220	SQD2 (sulfoquinovosyldiacylglycerol 2)	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig15381_at	At1g29195	-	-	5e-14	At5g14040	mitochondrial phosphate transporter	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig5032_at	At1g29195	-	-	4e-1	At4g38210	ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig6338_at	At1g29195	-	-	3e-1	At5g10890	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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