CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.17357.1.S1_at

Gene name
Homology with Arabidopsis Similar to At1g29195: unknown protein (HF=5e+0)

Module size 6 genes

NF 0.15

%ile 9.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.73 89.9 0.94 Zm.17357.1.S1_at CK370769 - - 5e+0 At1g29195 unknown protein O.I. H.G. S.X.
0.50 65.7 0.94 Zm.376.1.A1_at BM074849 Hypoxically induced transcript 2 - 2e-3 At1g05000 tyrosine specific protein phosphatase family protein O.I. H.G. S.X.
0.50 65.7 0.95 ZmAffx.566.1.S1_at AI714636 - - 2e-1 At5g05610 AL1 (ALFIN-LIKE 1) O.I. H.G. S.X.
0.36 41.3 0.94 Zm.5732.1.A1_at AY108368.1 hypothetical protein LOC100272253 - 1e+0 At1g05780 unknown protein O.I. H.G. S.X.
0.18 11.6 0.94 Zm.4705.1.A1_at BG840802 - - 2e-6 At1g14980 CPN10 (CHAPERONIN 10) O.I. H.G. S.X.
0.03 1.1 0.93 ZmAffx.238.1.A1_at AI670250 - - 1e+1 At3g62140 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.1 98.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1 98.6 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6 98.6 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1 98.5 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0 98.5 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8 98.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6 98.4 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3 98.4 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8 98.3 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3 96.9 GSM320456 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g29195, orthologous to the query gene, Zm.17357.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At1g29195 839794 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.
0.21 15.8 At2g38410 818422 VHS domain-containing protein / GAT domain-containing protein F:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, plasma membrane;MOFPBVA O.I. H.G. S.X.
0.19 12.7 At3g27580 822380 ATPK7 a member of a subfamily of Ser/Thr PKs in plants. O.I. H.G. S.X.
0.17 10.2 At1g55080 841951 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA O.I. H.G. S.X.
0.15 7.8 At4g22820 828381 zinc finger (AN1-like) family protein F:DNA binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVAF O.I. H.G. S.X.
0.15 7.8 At5g50230 835088 nucleotide binding F:nucleotide binding;P:multicellular organismal development;C:heterotrimeric G-protein complex;MFOBPAV O.I. H.G. S.X.
0.12 4.9 At4g26980 828806 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. H.G. S.X.
0.11 4.1 At1g25280 839112 AtTLP10 (TUBBY LIKE PROTEIN 10) Member of TLP family O.I. H.G. S.X.
0.09 2.8 At3g23540 821933 - F:unknown;P:unknown;C:cellular_component unknown;OBMFPA O.I. H.G. S.X.
0.06 1.4 At5g47200 834766 ATRAB1A F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVA O.I. H.G. S.X.
0.04 0.9 At3g10250 820187 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. H.G. S.X.
0.01 0.2 At3g01360 821158 unknown protein F:molecular_function unknown;P:unknown;C:unknown;PO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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