Co-expression analysis

Gene ID	Zm.17352.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g53030: unknown protein (HF=4e+0)
Module size	6 genes
NF	0.11
%ile	6.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.92	Zm.17352.1.A1_at	CF636500	-	-	4e+0	At5g53030	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.93	Zm.2928.1.S1_at	BG265909	ATP binding protein	-	1e+1	At5g35090	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.91	Zm.18025.1.S1_at	AY521228.1	osmotic stimulation MAPK	-	7e-2	At1g18040	CDKD1	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.93	Zm.8677.1.A1_at	CO531412	structural constituent of ribosome	-	2e-1	At3g26147	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	1.9	0.92	Zm.5851.15.A1_x_at	AI759130	-	-	9e-1	At2g04031	-	O.I.	H.G.	S.X.	Please select
0.04	1.5	0.92	Zm.17783.1.S1_at	CK370693	ML domain protein	-	1e-1	At1g75550	glycine-rich protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.7	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM205423	B73xMo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.217481.1.S1_at, orthologous to the query gene, Zm.17352.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	80.5	PtpAffx.217481.1.S1_at	At5g53030	hypothetical protein	-	6e+0	At5g35870	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.220996.1.S1_s_at	At5g53030	hypothetical protein	-	9e-16	At5g52170	HDG7 (HOMEODOMAIN GLABROUS 7)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.220335.1.S1_at	At5g53030	-	-	4e-1	At4g03600	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.210850.1.S1_at	At5g53030	hypothetical protein	-	3e-5	At5g26810	pectinesterase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.99692.1.S1_at	At5g53030	-	-	1e+0	Atcg00780	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.04	6.9	PtpAffx.54577.1.S1_at	At5g53030	-	-	6e+0	At5g25420	xanthine/uracil permease family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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