CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.17316.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g38317: LCR58 (Low-molecular-weight cysteine-rich 58) (HF=4e+0)

Module size 6 genes

NF 0.51

%ile 65.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 55.7 0.99 Zm.17316.1.A1_at CK369406 - - 4e+0 At5g38317 LCR58 (Low-molecular-weight cysteine-rich 58) O.I. H.G. S.X.
0.77 92.1 0.99 Zm.405.1.A1_at AF037034.2 hypothetical LOC541674 - 2e-1 At5g05340 peroxidase, putative O.I. H.G. S.X.
0.63 81.1 0.99 Zm.13859.1.S1_at AF439724.1 methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1 - 1e-12 At3g12290 tetrahydrofolate dehydrogenase/cyclohydrolase, putative O.I. H.G. S.X.
0.50 65.7 0.99 Zm.6076.1.A1_a_at AY111015.1 COX VIIa-like protein - 3e-1 At2g21195 unknown protein O.I. H.G. S.X.
0.42 51.3 0.99 Zm.5357.1.S1_at AI619398 hypothetical protein LOC100273070 - 8e-4 At1g03110 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.29 28.1 0.99 Zm.2952.1.A1_a_at CF629660 hypothetical protein LOC100192920 - 2e-3 At3g26680 SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.1 98.5 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5 98.3 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1 98.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5 98.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3 98.0 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9 97.9 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7 97.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2 97.8 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4 97.0 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2 94.5 GSM323170 Zm_SG200Dpep1_24hpi_I GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1

Inter-species module comparison

A co-expression module including the rice gene, Os02g0586900, orthologous to the query gene, Zm.17316.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.87 96.6 Os02g0586900 At5g38317 - Glycine rich family protein 1e+0 At2g16510 vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) O.I. H.G. S.X.
0.90 97.1 Os06g0139800 At5g38317 - Acid phosphatase-1(1) (Fragment) 1e-2 At4g29270 acid phosphatase class B family protein O.I. H.G. S.X.
0.80 94.6 Os12g0151000 At5g38317 - Purple acid phosphatase 2e-1 At3g46120 PAP19 (PURPLE ACID PHOSPHATASE 19) O.I. H.G. S.X.
0.80 94.6 Os08g0104400 At5g38317 - Conserved hypothetical protein 2e-2 At3g12960 unknown protein O.I. H.G. S.X.
0.78 93.4 Os05g0247800 At5g38317 - Glycoside hydrolase, family 18 protein 2e+0 At1g64628 CPuORF57 (Conserved peptide upstream open reading frame 57) O.I. H.G. S.X.
0.78 93.4 Os03g0693700 At5g38317 - Oxalate oxidase 1 (EC 1.2.3.4) (Germin) 8e+0 At3g10080 germin-like protein, putative O.I. H.G. S.X.
0.76 92.2 Os06g0110200 At5g38317 - Late embryogenesis abundant (LEA) group 1 familyprotein 1e+0 At4g11250 AGL52 O.I. H.G. S.X.
0.69 87.9 Os01g0958200 At5g38317 - Curculin-like (mannose-binding) lectin domaincontaining protein 3e+0 At1g79500 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) O.I. H.G. S.X.
0.55 73.7 Os01g0225600 At5g38317 - Late embryogenesis abundant protein Lea14-A 4e-1 At1g01470 LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) O.I. H.G. S.X.
0.44 58.1 Os07g0213600 At5g38317 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 3e-1 At5g61660 glycine-rich protein O.I. H.G. S.X.
0.35 41.7 Os02g0644000 At5g38317 - C13 endopeptidase NP1 (Fragment) 2e-23 At1g62710 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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