Co-expression analysis

Gene ID	Zm.17316.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g38317: LCR58 (Low-molecular-weight cysteine-rich 58) (HF=4e+0)
Module size	6 genes
NF	0.51
%ile	65.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.44	55.7	0.99	Zm.17316.1.A1_at	CK369406	-	-	4e+0	At5g38317	LCR58 (Low-molecular-weight cysteine-rich 58)	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.99	Zm.405.1.A1_at	AF037034.2	hypothetical LOC541674	-	2e-1	At5g05340	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.99	Zm.13859.1.S1_at	AF439724.1	methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1	-	1e-12	At3g12290	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	Zm.6076.1.A1_a_at	AY111015.1	COX VIIa-like protein	-	3e-1	At2g21195	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.99	Zm.5357.1.S1_at	AI619398	hypothetical protein LOC100273070	-	8e-4	At1g03110	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.99	Zm.2952.1.A1_a_at	CF629660	hypothetical protein LOC100192920	-	2e-3	At3g26680	SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.1	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM323170	Zm_SG200Dpep1_24hpi_I	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.C218000015_at, orthologous to the query gene, Zm.17316.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.9	PsAffx.C218000015_at	At5g38317	-	-	2e-1	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select
0.64	83.4	PsAffx.psHB039xB14f_s_at	At5g38317	-	-	2e-4	At1g14060	-	O.I.	H.G.	S.X.	Please select
0.63	82.9	PsAffx.CL982Contig1_at	At5g38317	-	-	2e+1	At5g06240	emb2735 (embryo defective 2735)	O.I.	H.G.	S.X.	Please select
0.63	82.9	PsAffx.CL720Contig1_at	At5g38317	-	-	8e+0	At3g43574	unknown protein	O.I.	H.G.	S.X.	Please select
0.62	82.1	PsAffx.CL2324Contig1_at	At5g38317	-	-	9e-1	At5g51650	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	PsAffx.CL2001Contig1_at	At5g38317	-	-	4e+0	At1g25250	AtIDD16 (Arabidopsis thaliana Indeterminate(ID)-Domain 16)	O.I.	H.G.	S.X.	Please select
0.54	74.8	PsAffx.C103000011_at	At5g38317	-	-	4e+0	At5g63905	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	74.2	PsAffx.CL1563Contig1_s_at	At5g38317	-	-	5e+0	At5g45880	pollen Ole e 1 allergen and extensin family protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	PsAffx.C67000061_s_at	At5g38317	-	-	8e-1	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	PsAffx.CL730Contig1_at	At5g38317	-	-	4e+0	At5g37260	RVE2 (REVEILLE 2)	O.I.	H.G.	S.X.	Please select
0.48	67.7	GmaAffx.35370.1.S1_s_at	At5g38317	-	-	1e+1	At5g47455	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	67.7	PsAffx.C114000056_at	At5g38317	-	-	8e-4	At3g06400	CHR11 (CHROMATIN-REMODELING PROTEIN 11)	O.I.	H.G.	S.X.	Please select
0.45	63.9	PsAffx.C112000050_s_at	At5g38317	-	-	2e-1	At5g54250	ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)	O.I.	H.G.	S.X.	Please select
0.42	59.3	PsAffx.C29000088_s_at	At5g38317	-	-	7e-1	At4g16610	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.42	59.3	PsAffx.C197000019_at	At5g38317	-	-	1e+0	At4g35490	MRPL11 (MITOCHONDRIAL RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.	Please select
0.40	57.1	PsAffx.CL860Contig1_at	At5g38317	-	-	8e-2	At2g40510	40S ribosomal protein S26 (RPS26A)	O.I.	H.G.	S.X.	Please select
0.38	53.3	PsAffx.C146000020_at	At5g38317	-	-	1e-2	At4g39870	-	O.I.	H.G.	S.X.	Please select
0.37	51.7	PsAffx.C29000074_at	At5g38317	-	-	5e+0	At5g35475	-	O.I.	H.G.	S.X.	Please select
0.37	51.7	PsAffx.CL653Contig1_at	At5g38317	-	-	6e-1	At2g04925	-	O.I.	H.G.	S.X.	Please select
0.19	23.7	PsAffx.CL1416Contig1_at	At5g38317	-	-	1e-8	At2g34250	protein transport protein sec61, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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