Co-expression analysis

Gene ID	Zm.17312.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g39700: MYB89 (myb domain protein 89) (HF=5e+0)
Module size	9 genes
NF	0.64
%ile	85.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	75.1	0.92	Zm.17312.1.A1_at	CK369501	-	-	5e+0	At5g39700	MYB89 (myb domain protein 89)	O.I.	H.G.	S.X.	Please select
0.74	90.3	0.93	Zm.1818.1.S1_a_at	BM073458	hypothetical protein LOC100194358	-	5e+0	At5g48545	histidine triad family protein / HIT family protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.92	Zm.654.1.A1_at	AY029561.1	hypothetical LOC542071	-	1e-3	At5g35330	MBD02 (METHYL-CPG-BINDING DOMAIN PROTEIN 02)	O.I.	H.G.	S.X.	Please select
0.70	87.0	0.93	Zm.16502.5.A1_at	AI586439	hypothetical protein LOC100280237	-	1e-12	At5g61780	tudor domain-containing protein / nuclease family protein	O.I.	H.G.	S.X.	Please select
0.70	87.0	0.94	Zm.2940.1.A1_at	AW360572	-	-	4e-5	At1g56500	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.92	Zm.9514.1.A1_at	BM269476	hypothetical protein LOC100279704	-	3e-1	At2g14500	F-box family protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.95	Zm.12244.2.S1_at	AI668243	-	-	9e-1	At5g46940	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.93	Zm.15807.1.A1_at	AY111212.1	-	-	1e+0	At4g19590	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.93	Zm.9088.1.A1_at	CB350848	-	-	1e+0	At2g06908	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
23.0	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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