Co-expression analysis

Gene ID	Zm.17287.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g54500: FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) (HF=5e+0)
Module size	7 genes
NF	0.22
%ile	17.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	0.95	Zm.17287.1.A1_at	CK144321	-	-	5e+0	At5g54500	FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.96	Zm.12459.1.A1_at	BE186592	-	-	9e-6	At3g44600	CYP71 (CYCLOPHILIN71)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.10900.1.A1_at	BM332136	-	-	1e-3	At1g20830	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.4046.1.S1_at	CA400292	hypothetical protein LOC100278945	-	6e-1	At4g35780	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.97	Zm.10652.1.S1_at	CN844569	hypothetical protein LOC100191856	-	4e-2	At1g23040	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.97	Zm.439.1.A1_at	AF058708.1	RNA polymerase sigma factor 1	-	3e+0	At1g64860	SIGA (SIGMA FACTOR A)	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.97	Zm.8576.1.A1_at	BM074724	caffeic acid 3-O-methyltransferase	-	4e-2	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.5	98.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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