CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.17277.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g57110: ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) (HF=1e-45)

Module size 6 genes

NF 0.61

%ile 82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.98 Zm.17277.1.S1_at CF273093 - - 1e-45 At5g57110 ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) O.I. H.G. S.X.
0.61 79.5 0.97 Zm.17278.1.S1_at AI964531 - - 3e-1 At4g25840 GPP1 (glycerol-3-phosphatase 1) O.I. H.G. S.X.
0.60 77.8 0.98 Zm.17282.1.S1_at CK369877 - - 1e+1 At5g32597 unknown protein O.I. H.G. S.X.
0.57 75.1 0.97 Zm.17280.1.S1_at CK369569 - - 7e-2 At1g03900 ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4) O.I. H.G. S.X.
0.50 65.7 0.98 Zm.17276.1.S1_at CF034932 - - 2e+0 At5g13290 CRN (CORYNE) O.I. H.G. S.X.
0.27 24.6 0.97 Zm.9237.1.A1_at BM350875 - - 4e-1 At3g07750 3' exoribonuclease family domain 1-containing protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.97	Zm.4839.1.S1_at	AY103614.1	aldehyde dehydrogenase family 7 member A1	-	6e-33	At1g54100	ALDH7B4 (Aldehyde Dehydrogenase 7B4)	O.I.	H.G.	S.X.
0.50	65.7	0.96	Zm.34.7.S1_at	CD447935	Hypothetical protein LOC100192755	-	7e+0	At4g28210	emb1923 (embryo defective 1923)	O.I.	H.G.	S.X.
0.50	65.7	0.97	ZmAffx.693.1.A1_at	AI737419	hypothetical protein LOC100191981	-	8e-1	At5g24130	unknown protein	O.I.	H.G.	S.X.
0.40	48.5	0.98	Zm.7784.1.S1_at	BM079884	eukaryotic translation initiation factor 3 subunit 1 alpha, 35kDa	-	4e-2	At3g24506	unknown protein	O.I.	H.G.	S.X.
0.36	41.3	0.97	Zm.13483.1.A1_at	CO528022	hypothetical protein LOC100192840	-	2e+0	At3g29970	germination protein-related	O.I.	H.G.	S.X.
0.36	41.3	0.97	Zm.14536.1.A1_at	AY187719.1	SET domain protein SDG117	-	5e-1	At1g55260	lipid binding	O.I.	H.G.	S.X.
0.33	36.0	0.97	Zm.18325.1.S1_at	CO530408	lipid binding protein	-	2e+0	At5g02560	HTA12	O.I.	H.G.	S.X.
0.32	33.4	0.95	Zm.1451.2.S1_x_at	CF021148	calmodulin	-	2e-111	At3g56800	CAM3 (CALMODULIN 3)	O.I.	H.G.	S.X.
0.31	31.6	0.97	Zm.9238.1.A1_at	CO533275	-	-	5e-2	At2g23320	WRKY15	O.I.	H.G.	S.X.
0.30	29.8	0.96	Zm.6721.5.A1_at	CF634010	Histone H4	-	1e-19	At5g59690	histone H4	O.I.	H.G.	S.X.
0.27	24.6	0.95	Zm.708.1.A1_at	AW563057	phenylalanine ammonia-lyase	-	2e+0	At5g61680	pectinesterase family protein	O.I.	H.G.	S.X.
0.27	24.6	0.94	Zm.4811.2.A1_x_at	CK370018	hypothetical protein LOC100279878	-	3e-2	At2g35020	UTP--glucose-1-phosphate uridylyltransferase family protein	O.I.	H.G.	S.X.
0.27	24.6	0.96	Zm.18805.1.A1_at	CO526380	indole-3-acetate beta-glucosyltransferase	-	1e-1	At3g16020	phospholipase C	O.I.	H.G.	S.X.
0.26	22.7	0.97	Zm.4596.1.A1_at	CF636987	lipoxygenase	-	4e-1	At5g17670	hydrolase, acting on ester bonds	O.I.	H.G.	S.X.
0.25	21.3	0.96	Zm.5796.1.S1_at	AI649702	-	-	3e-41	At1g62750	SCO1 (SNOWY COTYLEDON 1)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.2 98.8 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
12.6 98.7 GSM253281 ZM_8d_SG200_3Alu_II GSE10023 Maize gene expression during infection with Ustilago maydis
8.9 98.2 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis
5.0 96.7 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7 96.5 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5 96.3 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2 96.0 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0 95.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3 94.7 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0 94.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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