Co-expression analysis

Gene ID	Zm.17277.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g57110: ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) (HF=1e-45)
Module size	6 genes
NF	0.61
%ile	82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.17277.1.S1_at	CF273093	-	-	1e-45	At5g57110	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.97	Zm.17278.1.S1_at	AI964531	-	-	3e-1	At4g25840	GPP1 (glycerol-3-phosphatase 1)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.17282.1.S1_at	CK369877	-	-	1e+1	At5g32597	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.17280.1.S1_at	CK369569	-	-	7e-2	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.17276.1.S1_at	CF034932	-	-	2e+0	At5g13290	CRN (CORYNE)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.9237.1.A1_at	BM350875	-	-	4e-1	At3g07750	3' exoribonuclease family domain 1-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	98.8	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
12.6	98.7	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
8.9	98.2	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
5.0	96.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1614028_at, orthologous to the query gene, Zm.17277.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	77.3	1614028_at	At5g57110	hypothetical protein LOC100259808	-	1e-55	At5g57110	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	O.I.	H.G.	S.X.	Please select
0.80	93.6	1606999_at	At5g57110	hypothetical protein LOC100265295	-	3e-2	At5g04750	F1F0-ATPase inhibitor protein, putative	O.I.	H.G.	S.X.	Please select
0.71	89.5	1611599_at	At5g57110	hypothetical protein LOC100250312	-	1e-1	At1g78190	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	89.5	1613813_a_at	At5g57110	-	-	3e-11	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.60	81.9	1610968_at	At5g57110	similar to cysteine proteinase inhibitor	-	3e-11	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	O.I.	H.G.	S.X.	Please select
0.40	57.7	1618344_at	At5g57110	hypothetical protein LOC100266422	-	2e-5	At1g51160	synbindin, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Back to the CoP portal site

Back to the KAGIANA project homepage