Co-expression analysis

Gene ID	Zm.17277.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g57110: ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) (HF=1e-45)
Module size	6 genes
NF	0.61
%ile	82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.17277.1.S1_at	CF273093	-	-	1e-45	At5g57110	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.97	Zm.17278.1.S1_at	AI964531	-	-	3e-1	At4g25840	GPP1 (glycerol-3-phosphatase 1)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.17282.1.S1_at	CK369877	-	-	1e+1	At5g32597	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.17280.1.S1_at	CK369569	-	-	7e-2	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.17276.1.S1_at	CF034932	-	-	2e+0	At5g13290	CRN (CORYNE)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.9237.1.A1_at	BM350875	-	-	4e-1	At3g07750	3' exoribonuclease family domain 1-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	98.8	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
12.6	98.7	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
8.9	98.2	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
5.0	96.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.9178.1.S1_at, orthologous to the query gene, Zm.17277.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	94.1	Ta.9178.1.S1_at	At5g57110	-	-	7e-17	At4g29900	ACA10 (AUTOINHIBITED CA(2+)-ATPASE 10)	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.8098.2.S1_at	At5g57110	-	-	6e+0	At3g14200	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.9476.1.S1_s_at	At5g57110	-	-	5e+0	Atmg01000	-	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.8525.2.S1_x_at	At5g57110	-	-	1e+0	At3g57840	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.4585.1.S1_at	At5g57110	-	-	2e-4	At5g47760	ATPGLP2 (ARABIDOPSIS THALIANA 2-PHOSPHOGLYCOLATE PHOSPHATASE 2)	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.6962.1.S1_a_at	At5g57110	-	-	9e+0	At4g32960	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.9709.1.A1_at	At5g57110	-	-	9e-12	At3g16785	PLDP1 (PHOSPHOLIPASE D P1)	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.2772.1.S1_at	At5g57110	beclin1-like protein	-	1e-6	At3g61710	autophagy protein Apg6 family	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.12787.2.S1_a_at	At5g57110	-	-	3e+0	At2g29540	ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.7292.1.S1_at	At5g57110	-	-	1e-1	At3g15490	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.8525.2.S1_a_at	At5g57110	-	-	1e+0	At3g57840	self-incompatibility protein-related	O.I.	H.G.	S.X.	Please select
0.12	13.3	Ta.5848.1.S1_at	At5g57110	-	-	5e-2	At3g15430	regulator of chromosome condensation (RCC1) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage