Co-expression analysis

Gene ID	Zm.17277.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g57110: ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) (HF=1e-45)
Module size	6 genes
NF	0.61
%ile	82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.17277.1.S1_at	CF273093	-	-	1e-45	At5g57110	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.97	Zm.17278.1.S1_at	AI964531	-	-	3e-1	At4g25840	GPP1 (glycerol-3-phosphatase 1)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.17282.1.S1_at	CK369877	-	-	1e+1	At5g32597	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.17280.1.S1_at	CK369569	-	-	7e-2	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.17276.1.S1_at	CF034932	-	-	2e+0	At5g13290	CRN (CORYNE)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.9237.1.A1_at	BM350875	-	-	4e-1	At3g07750	3' exoribonuclease family domain 1-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	98.8	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
12.6	98.7	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
8.9	98.2	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
5.0	96.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, Gma.541.1.S1_at, orthologous to the query gene, Zm.17277.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.8	Gma.541.1.S1_at	At5g57110	-	-	5e-70	At5g57110	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	O.I.	H.G.	S.X.	Please select
0.56	78.2	Gma.8062.1.A1_at	At5g57110	-	-	1e-7	At2g21630	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.48	67.7	GmaAffx.93465.1.A1_s_at	At5g57110	-	-	3e-1	At5g23340	-	O.I.	H.G.	S.X.	Please select
0.48	67.7	Gma.10825.1.S1_at	At5g57110	-	-	1e-3	At3g01435	Expressed protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	Gma.2835.1.S1_at	At5g57110	-	-	4e-40	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	O.I.	H.G.	S.X.	Please select
0.43	60.6	Gma.11556.1.A1_at	At5g57110	-	-	1e-1	At5g08080	SYP132 (SYNTAXIN OF PLANTS 132)	O.I.	H.G.	S.X.	Please select
0.43	60.6	GmaAffx.5376.10.S1_s_at	At5g57110	-	-	2e-10	At2g18600	RUB1-conjugating enzyme, putative	O.I.	H.G.	S.X.	Please select
0.42	59.3	Gma.5514.1.S1_at	At5g57110	hypothetical protein LOC547474	-	1e-37	At1g26110	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	GmaAffx.43038.1.S1_at	At5g57110	-	-	2e+0	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.10829.1.S1_at	At5g57110	-	-	1e-4	At2g28360	-	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.1925.1.S1_at	At5g57110	-	-	5e-33	At1g69010	BIM2 (BES1-interacting Myc-like protein 2)	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.5043.1.S1_at	At5g57110	-	-	1e-11	At3g08850	RAPTOR1	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.7101.1.S1_at	At5g57110	-	-	5e-29	At2g27350	OTU-like cysteine protease family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.5514.1.S1_x_at	At5g57110	hypothetical protein LOC547474	-	1e-37	At1g26110	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	GmaAffx.87115.1.S1_at	At5g57110	-	-	1e+0	At3g49020	F-box family protein	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.3626.1.S1_at	At5g57110	-	-	5e-38	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	O.I.	H.G.	S.X.	Please select
0.30	40.4	Gma.4412.1.S1_x_at	At5g57110	TATA-box binding protein	-	4e-51	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.29	39.0	Gma.7733.1.S1_at	At5g57110	-	-	3e-7	At3g55070	-	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.11747.3.A1_at	At5g57110	-	-	4e+0	At2g39310	JAL22 (JACALIN-RELATED LECTIN 22)	O.I.	H.G.	S.X.	Please select
0.28	39.0	Gma.10823.2.S1_at	At5g57110	-	-	2e-82	At5g36230	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.8015.1.S1_at	At5g57110	-	-	1e-4	At3g19840	FF domain-containing protein / WW domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.5678.2.S1_a_at	At5g57110	-	-	2e-70	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.5678.1.S1_at	At5g57110	-	-	8e-61	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	O.I.	H.G.	S.X.	Please select
0.15	18.7	Gma.1837.1.S1_at	At5g57110	-	-	7e-9	At1g71900	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage