Co-expression analysis

Gene ID	Zm.17272.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g41190: amino acid transporter family protein (HF=8e-6)
Module size	6 genes
NF	0.10
%ile	5.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.9	0.87	Zm.17272.1.S1_at	CK371238	-	-	8e-6	At2g41190	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.87	Zm.12177.1.A1_at	BM380114	hypothetical protein LOC100193797	-	3e-1	At2g05752	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.89	Zm.8037.1.A1_at	BM073083	-	-	1e+0	At5g58580	ATL63 (ARABIDOPSIS TÓ	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.87	Zm.8348.1.A1_at	BM073795	Hypothetical protein LOC100193915	-	3e-1	At3g20750	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.83	Zm.4265.1.A1_at	CA402796	-	-	2e+0	At1g12710	AtPP2-A12 (Phloem protein 2-A12)	O.I.	H.G.	S.X.	Please select
0.02	0.7	0.84	Zm.13739.1.S1_at	AY106154.1	hypothetical protein LOC100273644	-	3e+0	At5g15390	tRNA/rRNA methyltransferase (SpoU) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.3	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the barley gene, Contig8340_at, orthologous to the query gene, Zm.17272.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	80.3	Contig8340_at	At2g41190	-	-	8e-3	At2g41190	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.73	88.7	Contig16253_at	At2g41190	-	-	7e+0	At5g48515	-	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig11287_s_at	At2g41190	-	-	1e+0	At5g15960	KIN1	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig8790_at	At2g41190	-	-	8e-17	At5g02800	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig10972_at	At2g41190	-	-	1e-5	At1g32500	ATNAP6 (NON-INTRINSIC ABC PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.56	74.3	Contig20219_at	At2g41190	-	-	1e-2	At3g24770	CLE41 (CLAVATA3/ESR-RELATED 41)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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