Co-expression analysis

Gene ID	Zm.17272.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g41190: amino acid transporter family protein (HF=8e-6)
Module size	6 genes
NF	0.10
%ile	5.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.9	0.87	Zm.17272.1.S1_at	CK371238	-	-	8e-6	At2g41190	amino acid transporter family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.87	Zm.12177.1.A1_at	BM380114	hypothetical protein LOC100193797	-	3e-1	At2g05752	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.89	Zm.8037.1.A1_at	BM073083	-	-	1e+0	At5g58580	ATL63 (ARABIDOPSIS TÓ	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.87	Zm.8348.1.A1_at	BM073795	Hypothetical protein LOC100193915	-	3e-1	At3g20750	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.83	Zm.4265.1.A1_at	CA402796	-	-	2e+0	At1g12710	AtPP2-A12 (Phloem protein 2-A12)	O.I.	H.G.	S.X.	Please select
0.02	0.7	0.84	Zm.13739.1.S1_at	AY106154.1	hypothetical protein LOC100273644	-	3e+0	At5g15390	tRNA/rRNA methyltransferase (SpoU) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.3	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the soybean gene, Gma.1883.1.S1_at, orthologous to the query gene, Zm.17272.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.8	Gma.1883.1.S1_at	At2g41190	-	-	4e+0	At3g02940	MYB107 (myb domain protein 107)	O.I.	H.G.	S.X.	Please select
0.38	53.3	GmaAffx.34643.1.A1_at	At2g41190	-	-	3e+0	At3g50764	unknown protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.14855.1.S1_s_at	At2g41190	-	-	3e-43	At4g33680	AGD2 (ABERRANT GROWTH AND DEATH 2)	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.7166.1.S1_at	At2g41190	-	-	8e-1	At3g10915	reticulon family protein	O.I.	H.G.	S.X.	Please select
0.35	48.6	Gma.910.1.A1_at	At2g41190	-	-	2e-8	At1g24360	3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase	O.I.	H.G.	S.X.	Please select
0.34	47.2	Gma.181.1.S1_at	At2g41190	biotin carboxylase precursor	-	0	At5g35360	CAC2	O.I.	H.G.	S.X.	Please select
0.33	46.1	Gma.8645.1.S1_at	At2g41190	-	-	2e-12	At1g60660	CB5LP (CYTOCHROME B5-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.3792.1.A1_at	At2g41190	-	-	3e+0	At1g68730	zinc finger (DNL type) family protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	Gma.16819.1.S1_at	At2g41190	biotin carboxyl carrier protein subunit precursor	-	1e-5	At5g15530	BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.4523.1.S1_at	At2g41190	-	-	2e-1	At3g23640	HGL1 (heteroglycan glucosidase 1)	O.I.	H.G.	S.X.	Please select
0.25	32.6	Gma.5248.1.S1_at	At2g41190	-	-	3e+0	At2g25570	binding	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.10340.1.S1_at	At2g41190	-	-	9e-1	At5g39360	EDL2 (EID1-like 2)	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.3884.4.S1_x_at	At2g41190	-	-	4e+0	At5g29050	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	Gma.8165.1.S1_at	At2g41190	-	-	2e-14	At3g53402	CPuORF46 (Conserved peptide upstream open reading frame 46)	O.I.	H.G.	S.X.	Please select
0.16	19.7	Gma.15717.1.A1_at	At2g41190	-	-	2e-1	At4g05410	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.14	17.5	GmaAffx.62534.1.S1_at	At2g41190	-	-	5e-1	At1g34370	STOP1 (sensitive to proton rhizotoxicity 1)	O.I.	H.G.	S.X.	Please select
0.14	17.5	Gma.14628.1.S1_at	At2g41190	-	-	4e-6	At1g25510	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.10	13.0	GmaAffx.93056.1.S1_s_at	At2g41190	-	-	4e+0	At3g21510	AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)	O.I.	H.G.	S.X.	Please select
0.10	13.0	Gma.2172.2.S1_a_at	At2g41190	-	-	1e-145	At1g55360	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	10.2	Gma.2250.2.S1_at	At2g41190	-	-	6e-2	At2g43230	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.04	7.0	Gma.5289.1.S1_a_at	At2g41190	-	-	2e-2	At5g20650	COPT5	O.I.	H.G.	S.X.	Please select
0.03	5.8	GmaAffx.11110.1.A1_at	At2g41190	-	-	1e-2	At2g35790	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	5.8	Gma.5910.1.S1_at	At2g41190	-	-	2e-63	At3g56310	alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.01	3.4	Gma.7794.1.A1_at	At2g41190	-	-	1e+0	At3g05540	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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