Co-expression analysis

Gene ID	Zm.17230.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At4g08895: inorganic phosphate transporter family protein (HF=8e+0)
Module size	6 genes
NF	0.33
%ile	33.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.59	76.1	0.95	Zm.17230.1.A1_at	CK144818	-	-	8e+0	At4g08895	inorganic phosphate transporter family protein	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.95	Zm.5328.1.S1_at	CD441067	hypothetical protein LOC100280151	-	4e-40	At2g36490	DML1 (DEMETER-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.96	Zm.15423.1.S1_at	CD446448	amidase	-	9e+0	At5g55130	CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.95	Zm.1284.1.S1_at	BE344880	-	-	1e+1	At5g50760	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.95	Zm.10231.1.A1_at	CF635301	hypothetical protein LOC100192062 /// hypothetical protein LOC100277651	-	2e+0	At3g51750	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.95	Zm.9774.1.A1_at	BQ779271	hypothetical protein LOC100276168	-	5e+0	At2g41997	LCR51 (LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 51)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	97.6	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.8	97.2	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.5	97.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.2	96.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.0	95.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.9	95.7	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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