Co-expression analysis

Gene ID Zm.17215.1.A1_at
Gene name RING zinc finger protein-like
Homology with ArabidopsisSimilar to At5g51440: 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M) (HF=2e+0)
Module size 6 genes
NF 0.43
%ile 51.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6381.10.91Zm.17215.1.A1_atCO523350RING zinc finger protein-like-2e+0At5g5144023.5 kDa mitochondrial small heat shock protein (HSP23.5-M)O.I.H.G.S.X.
0.5571.60.94Zm.14396.1.S1_atAF147726.1photosystem I subunit d1-1e-3At1g03130PSAD-2 (photosystem I subunit D-2)O.I.H.G.S.X.
0.5369.10.94Zm.19061.1.A1_atCO532046hypothetical protein LOC100193436-5e+0At3g62370unknown proteinO.I.H.G.S.X.
0.5065.70.95Zm.15432.1.S1_atCA401222--9e+0At5g02080DNA/panthothenate metabolism flavoprotein family proteinO.I.H.G.S.X.
0.2318.60.94Zm.33.1.S1_s_atM12144.1alpha zein 19kDa D1 /// alpha zein 19kDa D2 /// hypothetical protein LOC100101516 /// z1D alpha zein protein /// z1D alpha zein protein /// z1D alpha zein protein /// z1D alpha zein protein /// z1A alpha zein protein-7e-1At1g18265unknown proteinO.I.H.G.S.X.
0.2115.50.94Zm.6106.1.S1_atAI670203--8e-1At5g37370ATSRL1O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.598.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.598.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM320444protocol: mRNA - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM375788Deep-sowing 10d treatment Control, biological rep1GSE15048Gibberellin-induced gene expression in maize mesocotyl under deep-sowing conditionLink to GEO
4.396.1GSM375795Deep-sowing 10d treatment Control, biological rep2GSE15048Gibberellin-induced gene expression in maize mesocotyl under deep-sowing conditionLink to GEO
3.494.9GSM385710Deep-sowing 10d treatment TIBA, biological rep2GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1616547_at, orthologous to the query gene, Zm.17215.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.81616547_atAt5g51440hypothetical protein LOC100256265-5e-21At5g23230NIC2 (NICOTINAMIDASE 2)O.I.H.G.S.X.
0.1515.61606695_atAt5g51440hypothetical protein LOC100247470-1e+0At4g23770unknown proteinO.I.H.G.S.X.
0.099.41619272_atAt5g51440hypothetical protein LOC100265908-1e-4At1g29395COR414-TM1O.I.H.G.S.X.
0.056.01613680_a_atAt5g51440WD repeat 2-4e-63At1g12910ATAN11 (ANTHOCYANIN11)O.I.H.G.S.X.
0.056.01617445_s_atAt5g51440similar to Hsp70 interacting protein/thioredoxin chimera-1e+0At1g31020ATO2 (Arabidopsis thioredoxin o2)O.I.H.G.S.X.
0.034.21613777_atAt5g51440--1e+0At3g04430anac049 (Arabidopsis NAC domain containing protein 49)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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