Co-expression analysis

Gene ID Zm.17189.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g60540: PDX2 (PYRIDOXINE BIOSYNTHESIS 2) (HF=5e+0)
Module size 6 genes
NF 0.57
%ile 76.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.98Zm.17189.1.A1_atBM268883--5e+0At5g60540PDX2 (PYRIDOXINE BIOSYNTHESIS 2)O.I.H.G.S.X.
0.8094.00.98Zm.7750.4.S1_atAW499152--3e-28At1g75780TUB1O.I.H.G.S.X.
0.6785.80.98Zm.14898.1.A1_x_atBM351319--4e+0At3g43800ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)O.I.H.G.S.X.
0.6077.80.98Zm.2548.1.A1_atAY106256.1--2e-26At4g02570ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1)O.I.H.G.S.X.
0.4048.50.99Zm.18084.1.A1_atCD997940--8e-7At1g16870mitochondrial 28S ribosomal protein S29-relatedO.I.H.G.S.X.
0.2216.90.99Zm.11611.1.A1_atBM379298hypothetical protein LOC100192942-5e+0At1g0740017.8 kDa class I heat shock protein (HSP17.8-CI)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.099.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.499.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.898.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.898.6GSM320466protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.398.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.198.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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