Co-expression analysis

Gene ID Zm.17172.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g55675: unknown protein (HF=2e+0)
Module size 8 genes
NF 0.66
%ile 88.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7590.80.98Zm.17172.1.A1_atAI664919--2e+0At1g55675unknown proteinO.I.H.G.S.X.
0.7188.20.98Zm.2906.1.S1_atAY110115.1somatic embryogenesis receptor-like kinase2-2e-51At1g34210SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)O.I.H.G.S.X.
0.7188.20.98Zm.11598.1.A1_atBM379212--1e+0At5g11990proline-rich family proteinO.I.H.G.S.X.
0.6785.80.98Zm.737.2.A1_atAI746142--4e-6At5g60360AALP (Arabidopsis aleurain-like protease)O.I.H.G.S.X.
0.6381.10.98Zm.5133.1.S1_atCO526428hypothetical protein LOC100273486-2e-1At1g01710acyl-CoA thioesterase family proteinO.I.H.G.S.X.
0.5369.10.98Zm.791.1.S1_s_atAY111675.1hypothetical protein LOC100280140-3e+0At4g1672060S ribosomal protein L15 (RPL15A)O.I.H.G.S.X.
0.5369.10.98Zm.5729.1.A1_atAI637125peptidoglycan binding domain containing protein-3e-23At4g13670PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)O.I.H.G.S.X.
0.5065.70.98Zm.13202.1.A1_atCA403491hypothetical protein LOC100273129-1e-8At1g56590clathrin adaptor complexes medium subunit family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.297.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM205431Mo17 19 DAP endosperm tissue biological replicate 3GSE8278Non-additive and imprinted gene expression in hybrid maize endosperm_19DAPLink to GEO
5.797.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.218812.1.S1_at, orthologous to the query gene, Zm.17172.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6388.1PtpAffx.218812.1.S1_atAt1g55675hypothetical protein-3e+0At2g25685SCRL17 (SCR-Like 17)O.I.H.G.S.X.
0.1321.6PtpAffx.208965.1.S1_atAt1g55675hypothetical protein-3e-13At5g06960OBF5 (OCS-ELEMENT BINDING FACTOR 5)O.I.H.G.S.X.
0.046.9PtpAffx.222358.1.S1_x_atAt1g55675hypothetical protein-4e-1At3g42560unknown proteinO.I.H.G.S.X.
0.012.2PtpAffx.220233.1.S1_atAt1g55675--6e+0At5g51910TCP family transcription factor, putativeO.I.H.G.S.X.
0.012.2PtpAffx.157824.1.S1_atAt1g55675--4e+0At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.012.2PtpAffx.211517.1.S1_atAt1g55675hypothetical protein-4e+0At5g41860unknown proteinO.I.H.G.S.X.
0.012.2PtpAffx.206179.1.S1_atAt1g55675hypothetical protein-2e-11At2g18400ribosomal protein L6 family proteinO.I.H.G.S.X.
0.000.4PtpAffx.216824.1.S1_x_atAt1g55675hypothetical protein-4e-1At5g05113unknown proteinO.I.H.G.S.X.
0.000.4PtpAffx.144004.1.S1_atAt1g55675hypothetical protein-7e-6At1g76600unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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