Co-expression analysis

Gene ID	Zm.17166.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g65730: xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative (HF=4e+0)
Module size	6 genes
NF	0.62
%ile	83.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.9	0.97	Zm.17166.1.A1_at	CK370745	-	-	4e+0	At5g65730	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.97	Zm.4406.1.A1_at	AI834053	splicing factor, arginine/serine-rich 12	-	2e+0	At2g26695	binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.97	Zm.1934.1.S1_s_at	AW519956	hypothetical protein LOC100216744 /// glycerophosphodiester phosphodiesterase	-	3e+0	At1g62770	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.97	Zm.9236.1.A1_at	BM339258	-	-	8e-2	At3g01860	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.5362.1.A1_at	AW498436	hypothetical protein LOC100193109	-	1e-1	At1g79860	ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.5796.2.S1_at	AY107655.1	-	-	3e-18	At5g66420	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	97.9	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.9	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig20919_at, orthologous to the query gene, Zm.17166.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	Contig20919_at	At5g65730	-	-	5e+0	At3g62820	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.60	77.3	HVSMEc0003N06f_x_at	At5g65730	-	-	4e+0	At5g39610	ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig3478_at	At5g65730	-	-	1e-115	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig5374_at	At5g65730	-	-	3e+0	At3g23170	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	HT11K16u_s_at	At5g65730	-	-	9e-2	At5g40330	MYB23 (MYB DOMAIN PROTEIN 23)	O.I.	H.G.	S.X.	Please select
0.31	38.6	HV_CEb0006J06r2_at	At5g65730	-	-	1e+0	At3g56490	zinc-binding protein, putative / protein kinase C inhibitor, putative	O.I.	H.G.	S.X.	Please select
0.06	4.8	Contig6295_at	At5g65730	-	-	1e-17	At3g15460	brix domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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