Co-expression analysis

Gene ID	Zm.17091.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g18780: F-box family protein (HF=1e+0)
Module size	9 genes
NF	0.49
%ile	62.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	81.7	0.97	Zm.17091.1.A1_at	CF627429	-	-	1e+0	At2g18780	F-box family protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	Zm.16536.1.A1_a_at	AY103592.1	hypothetical protein LOC100272866 /// spermidine synthase 1	-	1e-17	At1g23820	SPDS1 (spermidine synthase 1)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	Zm.496.1.S1_at	AF236370.1	prohibitin3	-	7e-7	At5g40770	ATPHB3 (PROHIBITIN 3)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.98	Zm.3086.2.A1_a_at	CF633704	alpha-1,4-glucan-protein synthase	-	5e+0	At4g11350	transferase, transferring glycosyl groups	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.16547.1.A1_at	CO520746	aldehyde dehydrogenase, dimeric NADP-preferring	-	6e+0	At3g10020	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.12836.1.S1_at	CA400077	MPPN domain containing protein	-	2e+0	At2g21220	auxin-responsive protein, putative	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.16536.1.A1_at	AY103592.1	spermidine synthase 1	-	1e-17	At1g23820	SPDS1 (spermidine synthase 1)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.6977.3.A1_at	CF626979	hypothetical protein LOC100277809	-	5e+0	At5g39720	AIG2L (AVIRULENCE INDUCED GENE 2 LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.5018.3.A1_at	AI668145	-	-	9e-1	At5g48920	TED7 (TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.4	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM258201	Wf9 11-day seedling aerial tissue biological replicate 1	GSE10237	Gene expression variation among eight maize inbreds
6.5	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM258207	Wf9 11-day seedling aerial tissue biological replicate 3	GSE10237	Gene expression variation among eight maize inbreds
5.8	97.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM258204	Wf9 11-day seedling aerial tissue biological replicate 2	GSE10237	Gene expression variation among eight maize inbreds

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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