Co-expression analysis

Gene ID Zm.17087.1.S1_at
Gene name nonspecific lipid-transfer protein
Homology with ArabidopsisSimilar to At3g10915: reticulon family protein (HF=1e+1)
Module size 7 genes
NF 0.47
%ile 57.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6381.10.97Zm.17087.1.S1_atBM267086nonspecific lipid-transfer protein-1e+1At3g10915reticulon family proteinO.I.H.G.S.X.
0.5775.10.97Zm.5757.1.A1_atAI637260laccase 1-5e-4At5g01040LAC8 (laccase 8)O.I.H.G.S.X.
0.5065.70.97Zm.807.1.A1_atBG836005hypothetical protein LOC100216722-5e-2At4g14880OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)O.I.H.G.S.X.
0.5065.70.97Zm.6196.2.S1_atAI677134--3e+0At5g26880tRNA/rRNA methyltransferase (SpoU) family proteinO.I.H.G.S.X.
0.4759.90.97Zm.17701.1.S1_atCK370965hypothetical protein LOC100278172-4e-1At4g19400actin bindingO.I.H.G.S.X.
0.4759.90.98Zm.13808.2.A1_a_atAI665043--4e-7At4g03240FH (FRATAXIN HOMOLOG)O.I.H.G.S.X.
0.2216.90.97Zm.9411.1.S1_atCA827391SNF1-related protein kinase regulatory subunit beta-2-4e-1At4g26150CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.198.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.498.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM202290Mo17 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, AF039024_at, orthologous to the query gene, Zm.17087.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7388.7AF039024_atAt3g10915--4e+0At2g41260M17O.I.H.G.S.X.
0.6178.7HVSMEm0019P19r2_atAt3g10915--5e+0At5g52570BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)O.I.H.G.S.X.
0.2326.1HB09I22w_atAt3g10915--3e-1At5g17390universal stress protein (USP) family proteinO.I.H.G.S.X.
0.108.4HVSMEl0014J21r2_atAt3g10915--8e-1At1g27870nucleic acid bindingO.I.H.G.S.X.
0.086.5HVSMEm0022B04r2_atAt3g10915--1e+1At5g64890PROPEP2 (Elicitor peptide 2 precursor)O.I.H.G.S.X.
0.064.8HVSMEl0002B17r2_atAt3g10915--7e-2At5g22200harpin-induced family protein / HIN1 family protein / harpin-responsive family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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