Co-expression analysis

Gene ID Zm.16978.1.A1_at
Gene name hypothetical protein LOC100275636
Homology with ArabidopsisSimilar to At4g10800: - (HF=1e+0)
Module size 28 genes
NF 0.28
%ile 24.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9097.00.98Zm.16978.1.A1_atCF646243hypothetical protein LOC100275636-1e+0At4g10800-O.I.H.G.S.X.
0.4759.90.98ZmAffx.912.1.A1_atAI770956--5e-2At4g01580transcriptional factor B3 family proteinO.I.H.G.S.X.
0.4048.50.99ZmAffx.192.1.S1_atAI668442--2e-1At1g51930zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.3844.20.99ZmAffx.205.1.S1_atAI670190--8e-1At4g17520nuclear RNA-binding protein, putativeO.I.H.G.S.X.
0.3844.20.99ZmAffx.406.13.S1_atAI670444--5e+0At2g40316unknown proteinO.I.H.G.S.X.
0.3844.20.99Zm.6069.1.A1_a_atAY104047.1--1e-17At2g4184040S ribosomal protein S2 (RPS2C)O.I.H.G.S.X.
0.3742.30.99ZmAffx.5.1.S1_atAY372246.1cellulose synthase catalytic subunit 12-4e-26At5g17420IRX3 (IRREGULAR XYLEM 3)O.I.H.G.S.X.
0.3538.90.99Zm.3931.1.S1_atCO534241hypothetical protein LOC100276886-2e-3At2g35480unknown proteinO.I.H.G.S.X.
0.3437.20.98Zm.1919.1.A1_atCA401282--9e-1At2g28100ATFUC1 (alpha-L-fucosidase 1)O.I.H.G.S.X.
0.3336.00.99Zm.3893.1.A1_atCF623496--2e-1At2g32160-O.I.H.G.S.X.
0.3029.80.98ZmAffx.827.1.S1_atAI770520Growth-regulating factor 8-like-3e+0At3g21610-O.I.H.G.S.X.
0.3029.80.99Zm.9643.1.A1_s_atBM347294--3e+0At2g07721unknown proteinO.I.H.G.S.X.
0.2828.10.99ZmAffx.636.1.A1_atAI715064--3e+0At2g01505CLE16 (CLAVATA3/ESR-RELATED 16)O.I.H.G.S.X.
0.2828.10.99Zm.629.1.S1_atAF127021.1RNA polymerase T phage-like 1-9e-15At1g68990DNA-directed RNA polymerase, mitochondrial (RPOMT)O.I.H.G.S.X.
0.2828.10.99Zm.7830.1.S1_atBM080060nucleic acid binding protein-4e-1At2g03190ASK16 (ARABIDOPSIS SKP1-LIKE 16)O.I.H.G.S.X.
0.2521.30.99Zm.17344.1.S1_atCK370586--4e+0At4g34050caffeoyl-CoA 3-O-methyltransferase, putativeO.I.H.G.S.X.
0.2419.80.99Zm.10554.1.A1_atCA398680--3e-10At2g44090-O.I.H.G.S.X.
0.2318.60.99Zm.15.1.A1_atAY271262.1NADP malic enzyme3-3e-16At1g79750ATNADP-ME4 (NADP-malic enzyme 4)O.I.H.G.S.X.
0.2216.90.99Zm.8805.1.A1_atBM337840--6e+0At5g1620050S ribosomal protein-relatedO.I.H.G.S.X.
0.2216.90.99ZmAffx.912.1.S1_atAI770956--5e-2At4g01580transcriptional factor B3 family proteinO.I.H.G.S.X.
0.2014.20.98Zm.3843.1.S1_atAW054469hypothetical protein LOC100216880-2e+0At4g19720glycosyl hydrolase family 18 proteinO.I.H.G.S.X.
0.2014.20.99Zm.2521.1.A1_atCO519789hypothetical protein LOC100276170-1e-2At5g63980SAL1O.I.H.G.S.X.
0.1912.80.99Zm.5324.1.A1_atAI619250hypothetical protein LOC100280067-3e-11At4g19710bifunctional aspartate kinase/homoserine dehydrogenase, putative / AK-HSDH, putativeO.I.H.G.S.X.
0.1811.60.99ZmAffx.898.1.A1_atAI770889--8e-1At3g15280unknown proteinO.I.H.G.S.X.
0.169.40.99Zm.17818.1.A1_atCK145213--6e+0At5g52470FIB1 (FIBRILLARIN 1)O.I.H.G.S.X.
0.169.40.99Zm.5646.1.A1_a_atBM347849hypothetical protein LOC100191650-2e-25At1g04760ATVAMP726O.I.H.G.S.X.
0.136.80.99ZmAffx.189.2.S1_a_atAI668397--8e-1At1g70510KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2)O.I.H.G.S.X.
0.136.80.99ZmAffx.74.1.S1_atAI665196Hypothetical protein LOC100193550-5e-8At5g38720unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.098.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.196.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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