Co-expression analysis

Gene ID	Zm.16973.1.S1_at
Gene name	VQ motif family protein
Homology with Arabidopsis	Similar to At3g22160: VQ motif-containing protein (HF=1e-8)
Module size	35 genes
NF	0.24
%ile	19.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.94	99.5	0.93	Zm.16973.1.S1_at	CD219246	VQ motif family protein	-	1e-8	At3g22160	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.96	Zm.19063.1.S1_at	CO532335	hypothetical protein LOC100274479	-	2e-1	At5g58140	PHOT2 (PHOTOTROPIN 2)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.95	Zm.2168.1.A1_at	BE638518	-	-	2e+0	At3g46940	deoxyuridine 5'-triphosphate nucleotidohydrolase family	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.94	Zm.17309.1.A1_s_at	CK369677	t-snare	-	4e+0	At5g64680	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.95	Zm.12532.1.A1_at	AI745991	-	-	1e+0	At4g12850	far-red impaired responsive family protein / FAR1 family protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.95	Zm.9080.1.A1_at	BM266417	-	-	2e-2	At3g55280	RPL23AB (RIBOSOMAL PROTEIN L23AB)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.95	Zm.17254.1.A1_at	BM350630	-	-	2e-3	At2g39050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.12272.1.A1_at	BM351641	-	-	3e+0	At4g16240	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.6564.1.A1_at	AW231699	hypothetical protein LOC100272535	-	2e+0	At4g34850	chalcone and stilbene synthase family protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.96	Zm.17737.1.S1_at	CK370687	-	-	6e-3	At5g28560	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.95	Zm.4527.1.A1_s_at	AI734591	hypothetical protein LOC100272791	-	1e+0	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.96	Zm.10100.1.A1_at	BM382599	hypothetical protein LOC100277526	-	5e-6	At1g50900	-	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.95	Zm.16824.3.S1_at	CF634707	SAM domain family protein	-	3e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.96	Zm.6045.2.A1_a_at	BM337093	guanine nucleotide-binding protein beta subunit-like protein	-	2e-10	At1g18080	ATARCA	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.95	Zm.3742.1.A1_at	AY104810.1	-	-	2e-1	At3g47510	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.96	Zm.14951.1.A1_at	M36914.1	cell wall protein (put.); putative	-	5e-3	At2g30370	allergen-related	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.95	Zm.4359.1.A1_at	AI737260	EMB2756	-	1e-14	At1g34550	EMB2756 (EMBRYO DEFECTIVE 2756)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.18528.1.A1_at	CF630784	-	-	3e+0	At2g14095	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.95	Zm.5837.1.S1_at	AI649832	photosystem II reaction center W protein	-	6e+0	At5g66710	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.96	ZmAffx.811.1.S1_at	AI770397	-	-	3e+0	At2g31305	INH3 (INHIBITOR-3)	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.97	Zm.4201.1.A1_at	BM381822	hypothetical protein LOC100274325	-	2e+0	At3g21215	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.95	Zm.5558.1.A1_at	AY072298.1	-	-	3e-1	At3g20100	CYP705A19	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.96	Zm.6688.1.A1_at	BQ538665	hypothetical protein LOC100275476	-	3e+0	At1g68862	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.95	Zm.1912.1.A1_at	CO519819	hypothetical protein LOC100274020	-	4e-1	At4g10170	synaptobrevin-related family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.94	Zm.2253.1.A1_at	BM075618	hypothetical protein LOC100216849	-	8e-14	At2g22120	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.96	Zm.6904.1.S1_at	AY106446.1	hypothetical protein LOC100273500	-	6e-24	At5g37020	ARF8 (AUXIN RESPONSE FACTOR 8)	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.96	Zm.16102.1.A1_at	CF244374	-	-	8e-9	At5g48530	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.94	Zm.7881.1.A1_a_at	BM080283	-	-	3e-3	At4g24590	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.95	Zm.561.1.A1_at	AF244701.1	glutathione transferase23	-	5e-1	At3g43800	ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.95	Zm.12309.1.S1_at	CA403435	ABA-induced protein	-	5e-1	At5g29560	calcium ion binding	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.96	Zm.3080.1.A1_at	BM382308	IAA13 - auxin-responsive Aux/IAA family member	-	3e-15	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.95	Zm.3885.1.S1_at	CK145224	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.95	Zm.6432.1.A1_at	BQ538326	hypothetical protein LOC100191156	-	7e-10	At5g64200	ATSC35	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.95	Zm.3289.1.A1_at	AI979535	-	-	2e+0	At3g16240	DELTA-TIP	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.97	Zm.14995.1.A1_at	BQ538186	-	-	2e+0	At1g62960	ACS10 (ACC SYNTHASE 10)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.1	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.5	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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