Co-expression analysis

Gene ID Zm.16958.3.A1_x_at
Gene name
Homology with ArabidopsisSimilar to At5g16130: 40S ribosomal protein S7 (RPS7C) (HF=1e+0)
Module size 11 genes
NF 0.37
%ile 39.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5976.10.98Zm.16958.3.A1_x_atCF049902--1e+0At5g1613040S ribosomal protein S7 (RPS7C)O.I.H.G.S.X.
0.5369.10.98Zm.1910.1.A1_atAY106672.1hypothetical protein LOC100194078-3e+0At4g02160unknown proteinO.I.H.G.S.X.
0.5267.30.98Zm.15669.1.S1_atCA403955plant-specific domain TIGR01570 family protein-1e-4At3g25640unknown proteinO.I.H.G.S.X.
0.4759.90.98Zm.6555.2.S1_atCD446565hypothetical protein LOC100273907-1e-31At3g11710ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1)O.I.H.G.S.X.
0.4455.70.98Zm.2741.1.A1_atCB603857--2e+0At4g13140-O.I.H.G.S.X.
0.3233.40.99Zm.7309.1.S1_atAF384036.1nucleosome/chromatin assembly factor A-2e-3At1g18800NRP2 (NAP1-RELATED PROTEIN 2)O.I.H.G.S.X.
0.3233.40.99Zm.19022.1.S1_atCO526898hypothetical protein LOC100273481-7e-1At5g06570hydrolaseO.I.H.G.S.X.
0.2724.60.98Zm.2012.1.S1_atAW566063--8e+0At5g23220NIC3 (NICOTINAMIDASE 3)O.I.H.G.S.X.
0.2419.80.99Zm.16824.1.S1_atCF602732SAM domain family protein-5e-1At3g07170sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.2318.60.98Zm.14898.1.A1_x_atBM351319--4e+0At3g43800ATGSTU27 (GLUTATHIONE S-TRANSFERASE TAU 27)O.I.H.G.S.X.
0.2115.50.98Zm.5230.1.A1_atCA404914acyl-desaturase-2e-17At2g43710SSI2O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.397.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.897.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.492.2GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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